{ "type": "genome", "identifier": "GCF_023555415.1", "organism": "Halalkalibacter alkaliphilus", "title": "Halalkalibacter alkaliphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Centre For Cell Science (NCCS)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023555415.1", "bioproject": "PRJNA224116", "biosample": "SAMN25898032", "wgs_master": "JAKRYL000000000.1", "refseq_category": "reference genome", "taxid": "2917993", "species_taxid": "2917993", "organism_name": "Halalkalibacter alkaliphilus", "infraspecific_name": "strain=MEB205", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/25", "asm_name": "ASM2355541v1", "asm_submitter": "National Centre For Cell Science (NCCS)", "gbrs_paired_asm": "GCA_023555415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/555/415/GCF_023555415.1_ASM2355541v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4803227", "genome_size_ungapped": "4803227", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023555415.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4641", "protein_coding_gene_count": "4519", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-25", "dateModified": "2022-05-25", "datePublished": "2022-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Halalkalibacter alkaliphilus" ], "sample_taxid": [ "2917993" ], "sample_host_organism": [], 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"status": "below_threshold" }, { "organism_name": "Lederbergia wuyishanensis", "strain": "strain=CGMCC 1.12709", "accession": "GCA_022900255.1", "taxid": 1347903, "species_taxid": 1347903, "relation_to_type": "type", "validated": true, "ani": 76.0223, "matched_fragments": 63, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000787375.1", "gtdb_species": "s__Bacillus_L okhensis", "ani": 84.7198, "matched_fragments": 989, "total_fragments": 1572, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000513095.1", "gtdb_species": "s__Bacillus_L wakoensis", 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"spiral_cell_shape": null }, "_genome_taxon": [ "Halalkalibacter", "alkaliphilus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }