{ "type": "genome", "identifier": "GCF_023612255.1", "organism": "Luteibacter flocculans", "title": "Luteibacter flocculans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023612255.1", "bioproject": "PRJNA224116", "biosample": "SAMN16456042", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2780091", "species_taxid": "2780091", "organism_name": "Luteibacter flocculans", "infraspecific_name": "strain=EIF3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/31", "asm_name": "ASM2361225v1", "asm_submitter": "Georg-August-University Goettingen", "gbrs_paired_asm": "GCA_023612255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/612/255/GCF_023612255.1_ASM2361225v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4299254", "genome_size_ungapped": "4299254", "gc_percent": "65.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023612255.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "3727", "protein_coding_gene_count": "3638", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-31", "dateModified": "2022-05-31", "datePublished": "2022-05-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteibacter flocculans" ], "sample_taxid": [ "2780091" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Goettingen" ], "sample_host_location_id": [], "data_size": "1.185 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4299254", "Number of Sequences": "1", "Longest Sequences (bp)": "4299254", "N50 (bp)": "4299254", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "3727", "Average Protein Length": "349.1", "Coding Ratio (%)": "90.8", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteibacter yeojuensis", "strain": "strain=DSM 17673", "accession": "GCA_011742875.1", "taxid": 345309, "species_taxid": 345309, "relation_to_type": "type", "validated": true, "ani": 83.1918, "matched_fragments": 940, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter jiangsuensis", "strain": "strain=CGMCC 1.10133", "accession": "GCA_011742555.1", "taxid": 637577, "species_taxid": 637577, "relation_to_type": "type", "validated": true, "ani": 82.8613, "matched_fragments": 960, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter rhizovicinus", "strain": "strain=LJ96", "accession": "GCA_001887595.1", "taxid": 242606, "species_taxid": 242606, "relation_to_type": "type", "validated": true, "ani": 81.8723, "matched_fragments": 894, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter rhizovicinus", "strain": "strain=DSM 16549", "accession": "GCA_001010405.1", "taxid": 242606, "species_taxid": 242606, "relation_to_type": "type", "validated": true, "ani": 81.7707, "matched_fragments": 778, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter pinisoli", "strain": "strain=MAH-14", "accession": "GCA_006385595.1", "taxid": 2589080, "species_taxid": 2589080, "relation_to_type": "type", "validated": true, "ani": 81.6936, "matched_fragments": 885, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter anthropi", "strain": "strain=CCUG 25036", "accession": "GCA_011759365.1", "taxid": 564369, "species_taxid": 564369, "relation_to_type": "type", "validated": true, "ani": 81.6918, "matched_fragments": 844, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 79.2259, "matched_fragments": 479, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella japonica", "strain": "strain=DSM 16301", "accession": "GCA_001010355.1", "taxid": 231455, "species_taxid": 231455, "relation_to_type": "type", "validated": true, "ani": 79.1922, "matched_fragments": 422, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 79.1512, "matched_fragments": 537, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter fulvus", "strain": "strain=Jip2", "accession": "GCA_000264315.1", "taxid": 219571, "species_taxid": 219571, "relation_to_type": "type", "validated": true, "ani": 78.92, "matched_fragments": 425, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 78.8123, "matched_fragments": 457, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 78.0452, "matched_fragments": 243, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrocarboniphaga effusa", "strain": "strain=AP103", "accession": "GCA_000271305.1", "taxid": 243629, "species_taxid": 243629, "relation_to_type": "type", "validated": true, "ani": 76.1103, "matched_fragments": 166, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900119235.1", "gtdb_species": "s__Luteibacter 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"ani": 83.1781, "matched_fragments": 942, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109915.1", "gtdb_species": "s__Luteibacter sp900109915", "ani": 82.9661, "matched_fragments": 905, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011742555.1", "gtdb_species": "s__Luteibacter jiangsuensis", "ani": 82.8593, 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