{ "type": "genome", "identifier": "GCF_023614315.1", "organism": "Streptomyces sudanensis", "title": "Streptomyces sudanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Newcastle University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023614315.1", "bioproject": "PRJNA224116", "biosample": "SAMN27412228", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "436397", "species_taxid": "436397", "organism_name": "Streptomyces sudanensis", "infraspecific_name": "strain=SD 504", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/31", "asm_name": "ASM2361431v1", "asm_submitter": "Newcastle University", "gbrs_paired_asm": "GCA_023614315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/614/315/GCF_023614315.1_ASM2361431v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5259510", "genome_size_ungapped": "5244044", "gc_percent": "74.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023614315.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4838", "protein_coding_gene_count": "4308", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-31", "dateModified": "2022-05-31", "datePublished": "2022-05-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces sudanensis" ], "sample_taxid": [ "436397" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sudan" ], "sample_host_location_id": [], "data_size": "1.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5259510", "Number of Sequences": "1", "Longest Sequences (bp)": "5259510", "N50 (bp)": "5259510", "Gap Ratio (%)": "0.406559", "GCcontent (%)": "73.9", "Number of CDSs": "4751", "Average Protein Length": "309.2", "Coding Ratio (%)": "83.8", "Number of rRNAs": "18", "Number of tRNAs": "74", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces sudanensis", "strain": "strain=SD 504", "accession": "GCA_023614315.1", "taxid": 436397, "species_taxid": 436397, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1753, "total_fragments": 1753, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces somaliensis", "strain": "strain=DSM 40738", "accession": "GCA_024349285.1", "taxid": 78355, "species_taxid": 78355, "relation_to_type": "type", "validated": true, "ani": 91.8992, "matched_fragments": 1372, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseolilacinus", "strain": "strain=JCM 4335", "accession": "GCA_014649335.1", "taxid": 66904, "species_taxid": 66904, "relation_to_type": "type", "validated": true, "ani": 90.6249, "matched_fragments": 1379, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fradiae", "strain": "strain=ATCC 10745", "accession": "GCA_008704425.1", "taxid": 1906, "species_taxid": 1906, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1013, "matched_fragments": 1396, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fradiae", "strain": "strain=ATCC 10745", "accession": "GCA_009834665.1", "taxid": 1906, "species_taxid": 1906, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0999, "matched_fragments": 1353, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fradiae", "strain": "strain=NRRL B-1195", "accession": "GCA_002154445.1", "taxid": 1906, "species_taxid": 1906, "relation_to_type": "suspected-type", "validated": true, "ani": 87.8292, "matched_fragments": 901, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces formicae", "strain": "strain=1H-GS9", "accession": "GCA_022647665.1", "taxid": 1616117, "species_taxid": 1616117, "relation_to_type": "type", "validated": true, "ani": 82.9822, "matched_fragments": 1067, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 82.8875, "matched_fragments": 1135, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 81.7736, "matched_fragments": 1061, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000258595.1", "gtdb_species": "s__Streptomyces somaliensis_A", "ani": 99.83, "matched_fragments": 1589, "total_fragments": 1753, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_012396115.1", "gtdb_species": "s__Streptomyces somaliensis", "ani": 92.0184, "matched_fragments": 1083, "total_fragments": 1753, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649335.1", "gtdb_species": "s__Streptomyces roseolilacinus", "ani": 90.6773, "matched_fragments": 1374, "total_fragments": 1753, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000478605.2", "gtdb_species": "s__Streptomyces thermolilacinus", "ani": 88.9333, "matched_fragments": 1340, "total_fragments": 1753, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008704425.1", "gtdb_species": "s__Streptomyces fradiae", "ani": 88.143, "matched_fragments": 1389, "total_fragments": 1753, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001426405.1", "gtdb_species": "s__Streptomyces sp001426405", "ani": 82.8959, "matched_fragments": 1096, "total_fragments": 1753, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 28.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "sudanensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }