{ "type": "genome", "identifier": "GCF_023634645.1", "organism": "Vibrio sinus", "title": "Vibrio sinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023634645.1", "bioproject": "PRJNA224116", "biosample": "SAMN28614167", "wgs_master": "JAMKMR000000000.1", "refseq_category": "reference genome", "taxid": "2946865", "species_taxid": "2946865", "organism_name": "Vibrio sinus", "infraspecific_name": "strain=S4M6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/01", "asm_name": "ASM2363464v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_023634645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/634/645/GCF_023634645.1_ASM2363464v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4782621", "genome_size_ungapped": "4782621", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023634645.1-RS_2024_06_06", "annotation_date": "2024-06-06", "total_gene_count": "4331", "protein_coding_gene_count": "4207", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-01", "dateModified": "2022-06-01", "datePublished": "2022-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio sinus" ], "sample_taxid": [ "2946865" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: offshore of Fujian" ], "sample_host_location_id": [], "data_size": "1.370 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4782621", "Number of Sequences": "72", "Longest Sequences (bp)": "563611", "N50 (bp)": "203739", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.4", "Number of CDSs": "4246", "Average Protein Length": "324.3", "Coding Ratio (%)": "86.4", "Number of rRNAs": "1", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 80.4168, "matched_fragments": 532, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio albus", "strain": "strain=E4404", "accession": "GCA_003144035.1", "taxid": 2200953, "species_taxid": 2200953, "relation_to_type": "type", "validated": true, "ani": 79.2982, "matched_fragments": 120, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio alginolyticus", "strain": "strain=NCTC12160", "accession": "GCA_900460285.1", "taxid": 663, "species_taxid": 663, "relation_to_type": "type", "validated": true, "ani": 79.2187, "matched_fragments": 181, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mediterranei", "strain": "strain=NBRC 15635", "accession": "GCA_001591125.1", "taxid": 689, "species_taxid": 689, "relation_to_type": "type", "validated": true, "ani": 79.0979, "matched_fragments": 157, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mediterranei", "strain": "", "accession": "GCA_900088415.1", "taxid": 689, "species_taxid": 689, "relation_to_type": "type", "validated": true, "ani": 79.0655, "matched_fragments": 159, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.04, "matched_fragments": 204, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0115, "matched_fragments": 194, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000772105.1", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0107, "matched_fragments": 203, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhodolitus", "strain": "strain=G98", "accession": "GCA_003350325.1", "taxid": 2231649, "species_taxid": 2231649, "relation_to_type": "type", "validated": true, "ani": 78.9904, "matched_fragments": 195, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 78.975, "matched_fragments": 199, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nigripulchritudo", "strain": "strain=ATCC 27043", "accession": "GCA_000222685.2", "taxid": 28173, "species_taxid": 28173, "relation_to_type": "type", "validated": true, "ani": 78.9582, "matched_fragments": 154, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.9227, "matched_fragments": 185, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mexicanus", "strain": "strain=CAIM 1540", "accession": "GCA_001012815.1", "taxid": 1004326, "species_taxid": 1004326, "relation_to_type": "type", "validated": true, "ani": 78.9053, "matched_fragments": 198, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. francensis", "strain": "strain=02/041", "accession": "GCA_012395215.1", "taxid": 1443279, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.8854, "matched_fragments": 183, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio barjaei", "strain": "strain=3062", "accession": "GCA_001639065.2", "taxid": 1676683, "species_taxid": 1676683, "relation_to_type": "type", "validated": true, "ani": 78.8742, "matched_fragments": 163, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=CAIM 285", "accession": "GCA_003970425.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 78.8469, "matched_fragments": 160, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hangzhouensis", "strain": "strain=CGMCC 1.7062", "accession": "GCA_900107935.1", "taxid": 462991, "species_taxid": 462991, "relation_to_type": "type", "validated": true, "ani": 78.821, "matched_fragments": 156, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=IFO 15640", "accession": "GCA_019977755.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 78.8052, "matched_fragments": 170, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.8037, "matched_fragments": 184, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliilyticus", "strain": "strain=ATCC BAA-450", "accession": "GCA_000176135.1", "taxid": 190893, "species_taxid": 190893, "relation_to_type": "type", "validated": true, "ani": 78.7999, "matched_fragments": 215, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio algivorus", "strain": "strain=SA2", "accession": "GCA_002218005.2", "taxid": 1667024, "species_taxid": 1667024, "relation_to_type": "type", "validated": true, "ani": 78.7464, "matched_fragments": 127, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hippocampi", "strain": "strain=CECT 8226", "accession": "GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 78.6603, "matched_fragments": 157, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 78.6447, "matched_fragments": 167, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio salilacus", "strain": "strain=DSG-S6", "accession": "GCA_002811245.1", "taxid": 1323749, "species_taxid": 1323749, "relation_to_type": "type", "validated": true, "ani": 78.5834, "matched_fragments": 189, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cholerae", "strain": "strain=ATCC 14035", "accession": "GCA_000621645.1", "taxid": 666, "species_taxid": 666, "relation_to_type": "type", "validated": true, "ani": 78.5557, "matched_fragments": 158, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio artabrorum", "strain": "strain=CECT 7226", "accession": "GCA_024347295.1", "taxid": 446374, "species_taxid": 446374, "relation_to_type": "type", "validated": true, "ani": 78.5546, "matched_fragments": 170, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 78.5031, "matched_fragments": 163, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tarriae", "strain": "strain=2521-89", "accession": "GCA_002216685.1", "taxid": 2014742, "species_taxid": 2014742, "relation_to_type": "type", "validated": true, "ani": 78.4033, "matched_fragments": 173, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003263805.1", "gtdb_species": "s__Vibrio marisflavi", "ani": 80.3134, "matched_fragments": 500, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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79.0006, "matched_fragments": 194, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000222685.1", "gtdb_species": "s__Vibrio nigripulchritudo", "ani": 78.9881, "matched_fragments": 153, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.90", "min_intra_species_ani": "96.77", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCA_000755425.1", "gtdb_species": "s__Vibrio maritimus_A", "ani": 78.978, "matched_fragments": 151, 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