{ "type": "genome", "identifier": "GCF_023634845.1", "organism": "Flavobacterium amniphilum", "title": "Flavobacterium amniphilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023634845.1", "bioproject": "PRJNA224116", "biosample": "SAMN28613650", "wgs_master": "JAMLJL000000000.1", "refseq_category": "reference genome", "taxid": "1834035", "species_taxid": "1834035", "organism_name": "Flavobacterium amniphilum", "infraspecific_name": "strain=KYPY10", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/01", "asm_name": "ASM2363484v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_023634845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/634/845/GCF_023634845.1_ASM2363484v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4295405", "genome_size_ungapped": "4295395", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023634845.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "3937", "protein_coding_gene_count": "3868", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-01", "dateModified": "2022-06-01", "datePublished": "2022-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium amniphilum" ], "sample_taxid": [ "1834035" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Taiwan" ], "sample_host_location_id": [], "data_size": "1.204 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4295405", "Number of Sequences": "56", "Longest Sequences (bp)": "414934", "N50 (bp)": "226490", "Gap Ratio (%)": "0.000233", "GCcontent (%)": "36.5", "Number of CDSs": "3815", "Average Protein Length": "330.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1378, "total_fragments": 1404, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium terrae", "strain": "strain=DSM 18829", "accession": "GCA_900142035.1", "taxid": 415425, "species_taxid": 415425, "relation_to_type": "type", "validated": true, "ani": 79.6295, "matched_fragments": 398, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 78.829, "matched_fragments": 343, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 78.179, "matched_fragments": 183, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000498495.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 77.7937, "matched_fragments": 250, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.7642, "matched_fragments": 184, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000769895.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 77.6708, "matched_fragments": 252, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium supellecticarium", "strain": "strain=CC-CTC003", "accession": "GCA_004801375.1", "taxid": 2565924, "species_taxid": 2565924, "relation_to_type": "type", "validated": true, "ani": 77.6214, "matched_fragments": 199, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phycosphaerae", "strain": "strain=MK012", "accession": "GCA_010119235.1", "taxid": 2697515, "species_taxid": 2697515, "relation_to_type": "type", "validated": true, "ani": 77.6122, "matched_fragments": 185, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 77.5269, "matched_fragments": 185, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 77.4503, "matched_fragments": 160, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=UW101; ATCC 17061", "accession": "GCA_000016645.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 77.3511, "matched_fragments": 187, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=DSM 2064", "accession": "GCA_900142355.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 77.2824, "matched_fragments": 183, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 77.2507, "matched_fragments": 176, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pokkalii", "strain": "strain=L1I52", "accession": "GCA_014596575.1", "taxid": 1940408, "species_taxid": 1940408, "relation_to_type": "type", "validated": true, "ani": 77.2451, "matched_fragments": 174, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 77.1976, "matched_fragments": 149, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 77.1963, "matched_fragments": 163, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium beibuense", "strain": "strain=F44-8", "accession": "GCA_000769915.1", "taxid": 657326, "species_taxid": 657326, "relation_to_type": "type", "validated": true, "ani": 76.9793, "matched_fragments": 120, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.6087, "matched_fragments": 55, "total_fragments": 1404, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004959765.1", "gtdb_species": "s__Flavobacterium sp004959765", "ani": 79.7016, "matched_fragments": 437, 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