{ "type": "genome", "identifier": "GCF_023656545.1", "organism": "Micromonospora phytophila", "title": "Micromonospora phytophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chungnam National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023656545.1", "bioproject": "PRJNA224116", "biosample": "SAMN28689407", "wgs_master": "JAMOKF000000000.1", "refseq_category": "reference genome", "taxid": "709888", "species_taxid": "709888", "organism_name": "Micromonospora phytophila", "infraspecific_name": "strain=DSM 105363", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/06", "asm_name": "ASM2365654v1", "asm_submitter": "Chungnam National University", "gbrs_paired_asm": "GCA_023656545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/656/545/GCF_023656545.1_ASM2365654v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6257500", "genome_size_ungapped": "6257500", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "628", "contig_count": "628", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023656545.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6415", "protein_coding_gene_count": "5900", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-06", "dateModified": "2022-06-06", "datePublished": "2022-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora phytophila" ], "sample_taxid": [ "709888" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daejeon" ], "sample_host_location_id": [], "data_size": "1.694 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6257500", "Number of Sequences": "628", "Longest Sequences (bp)": "92348", "N50 (bp)": "15108", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "5612", "Average Protein Length": "283.0", "Coding Ratio (%)": "76.1", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"organism_name": "Micromonospora coxensis", "strain": "strain=DSM 45161", "accession": "GCA_900090295.1", "taxid": 356852, "species_taxid": 356852, "relation_to_type": "type", "validated": true, "ani": 86.7146, "matched_fragments": 1160, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 86.6751, "matched_fragments": 1250, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 86.2451, "matched_fragments": 1101, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora siamensis", "strain": "strain=DSM 45097", "accession": "GCA_900090305.1", "taxid": 299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 86.0, "matched_fragments": 1117, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chaiyaphumensis", "strain": "strain=DSM 45246", "accession": "GCA_900091435.1", "taxid": 307119, "species_taxid": 307119, "relation_to_type": "type", "validated": true, "ani": 85.9311, "matched_fragments": 1195, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 85.2112, "matched_fragments": 1115, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", 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