{ "type": "genome", "identifier": "GCF_023674425.1", "organism": "Sphingomonas donggukensis", "title": "Sphingomonas donggukensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023674425.1", "bioproject": "PRJNA224116", "biosample": "SAMN28656507", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2949093", "species_taxid": "2949093", "organism_name": "Sphingomonas donggukensis", "infraspecific_name": "strain=RMG20", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/08", "asm_name": "ASM2367442v1", "asm_submitter": "Dongguk university", "gbrs_paired_asm": "GCA_023674425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/674/425/GCF_023674425.1_ASM2367442v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2906096", "genome_size_ungapped": "2906096", "gc_percent": "68.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023674425.1-RS_2024_04_08", "annotation_date": "2024-04-08", "total_gene_count": "2853", "protein_coding_gene_count": "2794", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-08", "dateModified": "2022-06-08", "datePublished": "2022-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas donggukensis" ], "sample_taxid": [ "2949093" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.786 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2906096", "Number of Sequences": "1", "Longest Sequences (bp)": "2906096", "N50 (bp)": "2906096", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "2808", "Average Protein Length": "318.9", "Coding Ratio (%)": "92.4", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas guangdongensis", "strain": "strain=CGMCC 1.12672", "accession": "GCA_900199185.1", "taxid": 1141890, "species_taxid": 1141890, "relation_to_type": "type", "validated": true, "ani": 80.9898, "matched_fragments": 628, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsenosidivorax", "strain": "strain=KHI67", "accession": "GCA_007995065.1", "taxid": 862135, "species_taxid": 862135, "relation_to_type": "type", "validated": true, "ani": 80.2857, "matched_fragments": 539, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=NBRC 15099", "accession": "GCA_001592345.1", "taxid": 28212, "species_taxid": 28212, "relation_to_type": "type", "validated": true, "ani": 80.255, "matched_fragments": 457, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=DSM 7418", "accession": "GCA_002374855.1", "taxid": 28212, "species_taxid": 28212, "relation_to_type": "type", "validated": true, "ani": 80.1346, "matched_fragments": 561, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas melonis", "strain": "strain=DAPP-PG 224", "accession": "GCA_000379045.1", "taxid": 152682, "species_taxid": 152682, "relation_to_type": "type", "validated": true, "ani": 80.1102, "matched_fragments": 547, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas rubra", "strain": "strain=CGMCC 1.9113", "accession": "GCA_900115745.1", "taxid": 634430, "species_taxid": 634430, "relation_to_type": "type", "validated": true, "ani": 80.0769, "matched_fragments": 513, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jinjuensis", "strain": "strain=YC6723", "accession": "GCA_014197105.1", "taxid": 535907, "species_taxid": 535907, "relation_to_type": "type", "validated": true, "ani": 80.0524, "matched_fragments": 547, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hengshuiensis", "strain": "strain=WHSC-8", "accession": "GCA_000935025.1", "taxid": 1609977, "species_taxid": 1609977, "relation_to_type": "type", "validated": true, "ani": 79.9472, "matched_fragments": 557, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas kyeonggiensis", "strain": "strain=DSM 101806", "accession": "GCA_014196745.1", "taxid": 1268553, "species_taxid": 1268553, "relation_to_type": "type", "validated": true, "ani": 79.7658, "matched_fragments": 555, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas metalli", "strain": "strain=CGMCC 1.15330", "accession": "GCA_014641735.1", "taxid": 1779358, "species_taxid": 1779358, "relation_to_type": "type", "validated": true, "ani": 79.7652, "matched_fragments": 504, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=KIS18-15", "accession": "GCA_004792695.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 79.7635, "matched_fragments": 576, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hankookensis", "strain": "strain=KCTC 22579", "accession": "GCA_022664465.1", "taxid": 563996, "species_taxid": 563996, "relation_to_type": "type", "validated": true, "ani": 79.7565, "matched_fragments": 553, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas corticis", "strain": "strain=36D10-4-7", "accession": "GCA_012035195.1", "taxid": 2722791, "species_taxid": 2722791, "relation_to_type": "type", "validated": true, "ani": 79.7439, "matched_fragments": 545, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=DSM 100060", "accession": "GCA_011762145.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 79.725, "matched_fragments": 579, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panni", "strain": "strain=DSM 15761", "accession": "GCA_022664435.1", "taxid": 237612, "species_taxid": 237612, "relation_to_type": "type", "validated": true, "ani": 79.6669, "matched_fragments": 525, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panacis", "strain": "strain=DCY99", "accession": "GCA_001717955.1", "taxid": 1560345, "species_taxid": 1560345, "relation_to_type": "type", "validated": true, "ani": 79.6455, "matched_fragments": 496, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 79.6042, "matched_fragments": 526, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas populi", "strain": "strain=3-7", "accession": "GCA_004208535.1", "taxid": 2484750, "species_taxid": 2484750, "relation_to_type": "type", "validated": true, "ani": 79.5738, "matched_fragments": 498, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 79.4531, "matched_fragments": 513, "total_fragments": 968, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas psychrotolerans", "strain": "strain=Cra20", "accession": "GCA_002796605.1", "taxid": 1327635, "species_taxid": 1327635, "relation_to_type": "type", "validated": true, "ani": 79.3825, "matched_fragments": 511, "total_fragments": 968, 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