{
    "type": "genome",
    "identifier": "GCF_023699475.1",
    "organism": "Halomarina rubra",
    "title": "Halomarina rubra",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023699475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27867787",
        "wgs_master": "JALXFV000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2071873",
        "species_taxid": "2071873",
        "organism_name": "Halomarina rubra",
        "infraspecific_name": "strain=ZS-47-S",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/08",
        "asm_name": "ASM2369947v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_023699475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/699/475/GCF_023699475.1_ASM2369947v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4068489",
        "genome_size_ungapped": "4067544",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023699475.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "4279",
        "protein_coding_gene_count": "4173",
        "non_coding_gene_count": "51",
        "pubmed_id": "28779470"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-08",
    "dateModified": "2022-06-08",
    "datePublished": "2022-06-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halomarina rubra"
        ],
        "sample_taxid": [
            "2071873"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Zhejiang"
        ],
        "sample_host_location_id": [],
        "data_size": "1.099 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4068489",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "1003740",
        "N50 (bp)": "746529",
        "Gap Ratio (%)": "0.024235",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "4180",
        "Average Protein Length": "279.3",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halomarina rubra",
                "strain": "strain=ZS-47-S",
                "accession": "GCA_023699475.1",
                "taxid": 2071873,
                "species_taxid": 2071873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1347,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halomarina oriensis",
                "strain": "strain=JCM 16495",
                "accession": "GCA_009791395.1",
                "taxid": 671145,
                "species_taxid": 671145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0071,
                "matched_fragments": 918,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomarina salina",
                "strain": "strain=ZS-57-S",
                "accession": "GCA_023074835.1",
                "taxid": 1872699,
                "species_taxid": 1872699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1089,
                "matched_fragments": 931,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halostella litorea",
                "strain": "strain=DLLS-108",
                "accession": "GCA_004785955.1",
                "taxid": 2528831,
                "species_taxid": 2528831,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0689,
                "matched_fragments": 482,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halostella salina",
                "strain": "strain=CBA1114",
                "accession": "GCA_003675855.1",
                "taxid": 1547897,
                "species_taxid": 1547897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0276,
                "matched_fragments": 450,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halogeometricum rufum",
                "strain": "strain=CGMCC 1.7736",
                "accession": "GCA_900112175.1",
                "taxid": 553469,
                "species_taxid": 553469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0205,
                "matched_fragments": 510,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomicroarcula nitratireducens",
                "strain": "strain=F27",
                "accession": "GCA_019599505.1",
                "taxid": 2487749,
                "species_taxid": 2487749,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9368,
                "matched_fragments": 485,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorussus halobius",
                "strain": "strain=HD8-83",
                "accession": "GCA_004765805.1",
                "taxid": 1710537,
                "species_taxid": 1710537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7332,
                "matched_fragments": 453,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009791395.1",
                "gtdb_species": "s__Halomarina oriensis",
                "ani": 85.9714,
                "matched_fragments": 922,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003021975.1",
                "gtdb_species": "s__Halomarina sp003021975",
                "ani": 79.5558,
                "matched_fragments": 507,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003023565.1",
                "gtdb_species": "s__Halostella sp003023565",
                "ani": 78.155,
                "matched_fragments": 417,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004785955.1",
                "gtdb_species": "s__Halostella litorea",
                "ani": 78.0883,
                "matched_fragments": 479,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003675855.1",
                "gtdb_species": "s__Halostella salina",
                "ani": 78.0497,
                "matched_fragments": 449,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112175.1",
                "gtdb_species": "s__Halogeometricum rufum",
                "ani": 78.0416,
                "matched_fragments": 506,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogeometricum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003369835.1",
                "gtdb_species": "s__Halorussus rarus",
                "ani": 77.9267,
                "matched_fragments": 499,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_010119195.1",
                "gtdb_species": "s__Haloarcula salina",
                "ani": 77.8899,
                "matched_fragments": 439,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004765805.1",
                "gtdb_species": "s__Halorussus sp004765805",
                "ani": 77.7839,
                "matched_fragments": 447,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Halorussus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003021325.1",
                "gtdb_species": "s__Natronomonas sp003021325",
                "ani": 77.4385,
                "matched_fragments": 268,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Natronomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Halomarina",
        "rubra"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}