{ "type": "genome", "identifier": "GCF_023700005.1", "organism": "Larsenimonas rhizosphaerae", "title": "Larsenimonas rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023700005.1", "bioproject": "PRJNA224116", "biosample": "SAMN28514216", "wgs_master": "JAMLJK000000000.1", "refseq_category": "na", "taxid": "2944682", "species_taxid": "2944682", "organism_name": "Larsenimonas rhizosphaerae", "infraspecific_name": "strain=GH3-8", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/09", "asm_name": "ASM2370000v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_023700005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/700/005/GCF_023700005.1_ASM2370000v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3294024", "genome_size_ungapped": "3293824", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023700005.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "3098", "protein_coding_gene_count": "3011", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-09", "dateModified": "2022-06-09", "datePublished": "2022-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Larsenimonas rhizosphaerae" ], "sample_taxid": [ "2944682" ], "sample_host_organism": [ "Suaeda japonica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "0.930 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3294024", "Number of Sequences": "9", "Longest Sequences (bp)": "2179512", "N50 (bp)": "2179512", "Gap Ratio (%)": "0.006072", "GCcontent (%)": "58.0", "Number of CDSs": "3052", "Average Protein Length": "325.5", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Larsenimonas salina", "strain": "strain=CCM 8464", "accession": "GCA_023736155.1", "taxid": 1295565, "species_taxid": 1295565, "relation_to_type": "type", "validated": true, "ani": 78.681, "matched_fragments": 369, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larsenimonas suaedae", "strain": "strain=DSM 22428", "accession": "GCA_023712105.1", "taxid": 1851019, "species_taxid": 1851019, "relation_to_type": "type", "validated": true, "ani": 78.5923, "matched_fragments": 395, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria phyllosphaerae", "strain": "strain=EAod3", "accession": "GCA_900312995.1", "taxid": 2100822, "species_taxid": 2100822, "relation_to_type": "type", "validated": true, "ani": 78.0527, "matched_fragments": 247, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria konosiri", "strain": "strain=X49", "accession": "GCA_002155145.1", "taxid": 698828, "species_taxid": 698828, "relation_to_type": "type", "validated": true, "ani": 78.0222, "matched_fragments": 209, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria indalinina", "strain": "strain=DSM 14324", "accession": "GCA_003385845.1", "taxid": 184067, "species_taxid": 184067, "relation_to_type": "type", "validated": true, "ani": 78.0, "matched_fragments": 241, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria pakistanensis", "strain": "strain=KCTC 42082", "accession": "GCA_014652795.1", "taxid": 1508770, "species_taxid": 1508770, "relation_to_type": "type", "validated": true, "ani": 77.9225, "matched_fragments": 223, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ilicicola", "strain": "strain=DSM 19980", "accession": "GCA_900128925.1", "taxid": 480814, "species_taxid": 480814, "relation_to_type": "type", "validated": true, "ani": 77.4183, "matched_fragments": 140, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urumqiensis", "strain": "strain=BZ-SZ-XJ27", "accession": "GCA_002879635.1", "taxid": 1684789, "species_taxid": 1684789, "relation_to_type": "type", "validated": true, "ani": 77.4137, "matched_fragments": 118, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pacifica", "strain": "strain=NBRC 102220", "accession": "GCA_007989625.1", "taxid": 77098, "species_taxid": 77098, "relation_to_type": "type", "validated": true, "ani": 77.3688, "matched_fragments": 128, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 77.3069, "matched_fragments": 147, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pantelleriensis", "strain": "strain=AAP", "accession": "GCA_900102875.1", "taxid": 48727, "species_taxid": 48727, "relation_to_type": "type", "validated": true, "ani": 77.2249, "matched_fragments": 133, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urumqiensis", "strain": "strain=BZ-SZ-XJ27", "accession": "GCA_003028575.1", "taxid": 1684789, "species_taxid": 1684789, "relation_to_type": "type", "validated": true, "ani": 77.1894, "matched_fragments": 122, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 77.1797, "matched_fragments": 118, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cobetia marina", "strain": "strain=JCM 21022", "accession": "GCA_001720485.1", "taxid": 28258, "species_taxid": 28258, "relation_to_type": "type", "validated": true, "ani": 77.1692, "matched_fragments": 182, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas elongata", "strain": "strain=type strain: DSM 2581", "accession": "GCA_000196875.2", "taxid": 2746, "species_taxid": 2746, "relation_to_type": "type", "validated": true, "ani": 77.1606, "matched_fragments": 146, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas xinjiangensis", "strain": "strain=TRM 0175", "accession": "GCA_000759345.1", "taxid": 1166948, "species_taxid": 1166948, "relation_to_type": "type", "validated": true, "ani": 77.0681, "matched_fragments": 130, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria sinocarnis", "strain": "strain=DSM 23229", "accession": "GCA_003633775.1", "taxid": 595502, "species_taxid": 595502, "relation_to_type": "type", "validated": true, "ani": 77.0638, "matched_fragments": 193, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas qijiaojingensis", "strain": "strain=KCTC 22228", "accession": "GCA_014651875.1", "taxid": 980347, "species_taxid": 980347, "relation_to_type": "type", "validated": true, "ani": 76.9109, "matched_fragments": 133, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Carnimonas nigrificans", "strain": "strain=ATCC BAA-78", "accession": "GCA_000526695.1", "taxid": 64323, "species_taxid": 64323, "relation_to_type": "type", "validated": true, "ani": 76.9008, "matched_fragments": 81, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitrititolerans", "strain": "strain=GL14", "accession": "GCA_003696285.1", "taxid": 2482751, "species_taxid": 2482751, "relation_to_type": "type", "validated": true, "ani": 76.2844, "matched_fragments": 62, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 76.0779, "matched_fragments": 71, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas viciae", "strain": "strain=11K1", "accession": "GCA_004786035.1", "taxid": 2505979, "species_taxid": 2505979, "relation_to_type": "type", "validated": true, "ani": 76.0599, "matched_fragments": 50, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900312995.1", "gtdb_species": "s__Kushneria phyllosphaerae", "ani": 78.0378, "matched_fragments": 248, "total_fragments": 1094, "gtdb_taxonomy": 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