{
    "type": "genome",
    "identifier": "GCF_023702635.1",
    "organism": "Spongiibacter taiwanensis",
    "title": "Spongiibacter taiwanensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Oceanology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023702635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN28818705",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1748242",
        "species_taxid": "1748242",
        "organism_name": "Spongiibacter taiwanensis",
        "infraspecific_name": "strain=SPT1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/12",
        "asm_name": "ASM2370263v1",
        "asm_submitter": "Institute of Oceanology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_023702635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/702/635/GCF_023702635.1_ASM2370263v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3714182",
        "genome_size_ungapped": "3714182",
        "gc_percent": "57.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023702635.1-RS_2024_06_14",
        "annotation_date": "2024-06-14",
        "total_gene_count": "3368",
        "protein_coding_gene_count": "3309",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-12",
    "dateModified": "2022-06-12",
    "datePublished": "2022-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Spongiibacter taiwanensis"
        ],
        "sample_taxid": [
            "1748242"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: shallow coastal region of Nanya"
        ],
        "sample_host_location_id": [],
        "data_size": "1.051 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3714182",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3714182",
        "N50 (bp)": "3714182",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.0",
        "Number of CDSs": "3377",
        "Average Protein Length": "325.2",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Spongiibacter taiwanensis",
                "strain": "strain=SPT1",
                "accession": "GCA_023702635.1",
                "taxid": 1748242,
                "species_taxid": 1748242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1237,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Spongiibacter tropicus",
                "strain": "strain=DSM 19543",
                "accession": "GCA_000420325.1",
                "taxid": 454602,
                "species_taxid": 454602,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3282,
                "matched_fragments": 239,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spongiibacter thalassae",
                "strain": "strain=KMU-166",
                "accession": "GCA_012272835.1",
                "taxid": 2721624,
                "species_taxid": 2721624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0828,
                "matched_fragments": 235,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spongiibacter nanhainus",
                "strain": "strain=csc3.9",
                "accession": "GCA_016132545.1",
                "taxid": 2794344,
                "species_taxid": 2794344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8303,
                "matched_fragments": 272,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spongiibacter pelagi",
                "strain": "strain=KMU-158",
                "accession": "GCA_014705705.1",
                "taxid": 2760804,
                "species_taxid": 2760804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8097,
                "matched_fragments": 191,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer celer",
                "strain": "strain=KCTC 12973",
                "accession": "GCA_020991125.1",
                "taxid": 435905,
                "species_taxid": 435905,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1035,
                "matched_fragments": 90,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter vinifirmus",
                "strain": "strain=FB1",
                "accession": "GCA_002258215.1",
                "taxid": 355591,
                "species_taxid": 355591,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0552,
                "matched_fragments": 80,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer mangrovi",
                "strain": "strain=DD-13",
                "accession": "GCA_002009015.1",
                "taxid": 927787,
                "species_taxid": 927787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8271,
                "matched_fragments": 71,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella unica",
                "strain": "strain=GH4-78",
                "accession": "GCA_004354085.1",
                "taxid": 2547392,
                "species_taxid": 2547392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6498,
                "matched_fragments": 79,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudohaliea rubra",
                "strain": "strain=DSM 19751",
                "accession": "GCA_000764025.1",
                "taxid": 475795,
                "species_taxid": 475795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5058,
                "matched_fragments": 61,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacter denitrificans",
                "strain": "strain=JB02H27",
                "accession": "GCA_008795955.1",
                "taxid": 2597703,
                "species_taxid": 2597703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4365,
                "matched_fragments": 54,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella sediminis",
                "strain": "strain=U0301",
                "accession": "GCA_003457605.1",
                "taxid": 2283635,
                "species_taxid": 2283635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2015,
                "matched_fragments": 103,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cedrina subsp. cedrina",
                "strain": "",
                "accession": "GCA_900625035.1",
                "taxid": 76762,
                "species_taxid": 651740,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0663,
                "matched_fragments": 59,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gallaecimonas xiamenensis",
                "strain": "strain=3-C-1",
                "accession": "GCA_000299915.1",
                "taxid": 1207039,
                "species_taxid": 1207039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0309,
                "matched_fragments": 56,
                "total_fragments": 1238,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000420325.1",
                "gtdb_species": "s__Spongiibacter tropicus",
                "ani": 78.3282,
                "matched_fragments": 239,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Spongiibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.00",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000422345.1",
                "gtdb_species": "s__Spongiibacter marinus_A",
                "ani": 78.3077,
                "matched_fragments": 195,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Spongiibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001010805.1",
                "gtdb_species": "s__IMCC21906 sp001010805",
                "ani": 78.2178,
                "matched_fragments": 314,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__IMCC21906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012272835.1",
                "gtdb_species": "s__Spongiibacter sp012272835",
                "ani": 78.0828,
                "matched_fragments": 235,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Spongiibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002915595.1",
                "gtdb_species": "s__Marortus luteolus",
                "ani": 77.9004,
                "matched_fragments": 152,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Marortus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016132545.1",
                "gtdb_species": "s__CSC3-9 sp016132545",
                "ani": 77.8519,
                "matched_fragments": 271,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__CSC3-9",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014705705.1",
                "gtdb_species": "s__KMU-158 sp014705705",
                "ani": 77.8272,
                "matched_fragments": 190,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__KMU-158",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902705855.1",
                "gtdb_species": "s__Marortus aliphaticivorans_B",
                "ani": 77.5232,
                "matched_fragments": 128,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Spongiibacteraceae;g__Marortus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002258215.1",
                "gtdb_species": "s__Marinobacter vinifirmus",
                "ani": 77.0566,
                "matched_fragments": 79,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900107725.1",
                "gtdb_species": "s__Microbulbifer marinus",
                "ani": 76.8389,
                "matched_fragments": 87,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002009015.1",
                "gtdb_species": "s__Microbulbifer mangrovi",
                "ani": 76.8271,
                "matched_fragments": 71,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003402235.1",
                "gtdb_species": "s__Parahaliea mediterranea",
                "ani": 76.8259,
                "matched_fragments": 124,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008370495.1",
                "gtdb_species": "s__Halioglobus sp008370495",
                "ani": 76.6943,
                "matched_fragments": 66,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004354085.1",
                "gtdb_species": "s__Halioglobus sp004354085",
                "ani": 76.6498,
                "matched_fragments": 79,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000764025.1",
                "gtdb_species": "s__Pseudohaliea rubra",
                "ani": 76.5058,
                "matched_fragments": 61,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Pseudohaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013367775.1",
                "gtdb_species": "s__Microbulbifer sp013367775",
                "ani": 76.4756,
                "matched_fragments": 86,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003457605.1",
                "gtdb_species": "s__Halioglobus sediminis",
                "ani": 76.2015,
                "matched_fragments": 103,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002414665.1",
                "gtdb_species": "s__Haliea sp002414665",
                "ani": 75.928,
                "matched_fragments": 64,
                "total_fragments": 1238,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Haliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.31,
        "cell_length": 0.083,
        "doubling_h": 0.868,
        "growth_tmp": 28.0,
        "optimum_tmp": 30.416,
        "optimum_ph": 7.75,
        "genome_size": 3691442.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Spongiibacter",
        "taiwanensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}