{ "type": "genome", "identifier": "GCF_023703085.1", "organism": "Alkalicoccobacillus plakortidis", "title": "Alkalicoccobacillus plakortidis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023703085.1", "bioproject": "PRJNA224116", "biosample": "SAMN28869881", "wgs_master": "JAMQJY000000000.1", "refseq_category": "na", "taxid": "444060", "species_taxid": "444060", "organism_name": "Alkalicoccobacillus plakortidis", "infraspecific_name": "strain=DSM 19153", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/12", "asm_name": "ASM2370308v1", "asm_submitter": "Chung-Ang university", "gbrs_paired_asm": "GCA_023703085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/703/085/GCF_023703085.1_ASM2370308v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4366190", "genome_size_ungapped": "4366190", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023703085.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "4792", "protein_coding_gene_count": "4197", "non_coding_gene_count": "102", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-12", "dateModified": "2022-06-12", "datePublished": "2022-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alkalicoccobacillus plakortidis" ], "sample_taxid": [ "444060" ], "sample_host_organism": [ "sponge" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway: Norwegian Sea" ], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4366190", "Number of Sequences": "9", "Longest Sequences (bp)": "2740628", "N50 (bp)": "2740628", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "5058", "Average Protein Length": "245.9", "Coding Ratio (%)": "85.5", "Number of rRNAs": "23", "Number of tRNAs": "71", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 79.2163, "matched_fragments": 53, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacterium alkalinitrilicum", "strain": "strain=DSM 22532", "accession": "GCA_002019605.1", "taxid": 427920, "species_taxid": 427920, "relation_to_type": "type", "validated": true, "ani": 78.8042, "matched_fragments": 79, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus nanhaiisediminis", "strain": "strain=CGMCC 1.10116", "accession": "GCA_007830185.1", "taxid": 688079, "species_taxid": 688079, "relation_to_type": "type", "validated": true, "ani": 77.4814, "matched_fragments": 89, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus suaedae", "strain": "strain=YZJH907-2", "accession": "GCA_017939705.1", "taxid": 2822140, "species_taxid": 2822140, "relation_to_type": "type", "validated": true, "ani": 77.2964, "matched_fragments": 97, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus xiaoxiensis", "strain": "strain=DSM 21943", "accession": "GCA_016907895.1", "taxid": 766895, "species_taxid": 766895, "relation_to_type": "type", "validated": true, "ani": 77.1955, "matched_fragments": 86, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertibacillus haloalkaliphilus", "strain": "strain=KJ1-10-99", "accession": "GCA_019039105.1", "taxid": 1328930, "species_taxid": 1328930, "relation_to_type": "type", "validated": true, "ani": 77.1743, "matched_fragments": 58, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalophilus marmarensis", "strain": "strain=DSM 21297", "accession": "GCA_000474275.2", "taxid": 521377, "species_taxid": 521377, "relation_to_type": "type", "validated": true, "ani": 76.9511, "matched_fragments": 100, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus akibai", "strain": "strain=JCM 9157", "accession": "GCA_001315085.1", "taxid": 1411, "species_taxid": 1411, "relation_to_type": "type", "validated": true, "ani": 76.9501, "matched_fragments": 101, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus wakoensis", "strain": "strain=JCM 9140", "accession": "GCA_000513095.1", "taxid": 127891, "species_taxid": 127891, "relation_to_type": "type", "validated": true, "ani": 76.949, "matched_fragments": 96, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus akibai", "strain": "strain=JCM 9157", "accession": "GCA_000513135.1", "taxid": 1411, "species_taxid": 1411, "relation_to_type": "type", "validated": true, "ani": 76.898, "matched_fragments": 102, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus wakoensis", "strain": "strain=JCM 9140", "accession": "GCA_001315045.1", "taxid": 127891, "species_taxid": 127891, "relation_to_type": "type", "validated": true, "ani": 76.8894, "matched_fragments": 96, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016798245.1", "gtdb_species": "s__Alkalihalobacillus_A gibsonii_A", "ani": 79.8444, "matched_fragments": 589, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Alkalihalobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900199725.1", "gtdb_species": "s__Cytobacillus massiliigabonensis", "ani": 79.6316, "matched_fragments": 50, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007293315.1", "gtdb_species": "s__Alkalihalobacillus_A sp007293315", "ani": 79.218, "matched_fragments": 505, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Alkalihalobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002019605.1", "gtdb_species": "s__Bacillus_BH alkalinitrilicus", "ani": 78.8042, "matched_fragments": 79, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_F;g__Bacillus_BH", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.46", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000005825.2", "gtdb_species": "s__Bacillus_S pseudofirmus", "ani": 78.5349, "matched_fragments": 104, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_S", "ani_circumscription_radius": 95.9507, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "97.22", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007830185.1", "gtdb_species": "s__Bacillus_L nanhaiisediminis", "ani": 77.4814, "matched_fragments": 89, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017939705.1", "gtdb_species": "s__Bacillus_L sp017939705", "ani": 77.2505, "matched_fragments": 98, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907895.1", "gtdb_species": "s__Bacillus_H xiaoxiensis", "ani": 77.2271, "matched_fragments": 86, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_H", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.73", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_019039105.1", "gtdb_species": "s__Desertibacillus haloalkaliphilus", "ani": 77.1284, "matched_fragments": 59, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__KJ1-10-99;g__Desertibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001038565.1", "gtdb_species": "s__Alkalihalobacillus pseudalcaliphilus", "ani": 77.0446, "matched_fragments": 93, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Alkalihalobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000474275.2", "gtdb_species": "s__Bacillus_S marmarensis", "ani": 76.9511, "matched_fragments": 100, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_S", "ani_circumscription_radius": 95.9507, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000513135.1", "gtdb_species": "s__Bacillus_L akibai", "ani": 76.9485, "matched_fragments": 102, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000513095.1", "gtdb_species": "s__Bacillus_L wakoensis", "ani": 76.9138, "matched_fragments": 95, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000787375.1", "gtdb_species": "s__Bacillus_L okhensis", "ani": 76.8374, "matched_fragments": 106, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001884185.1", "gtdb_species": "s__Bacillus_A albus", "ani": 76.4773, "matched_fragments": 50, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 25, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Alkalicoccobacillus", "plakortidis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }