{ "type": "genome", "identifier": "GCF_023712105.1", "organism": "Larsenimonas suaedae", "title": "Larsenimonas suaedae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023712105.1", "bioproject": "PRJNA224116", "biosample": "SAMN28514218", "wgs_master": "JAMLJI000000000.1", "refseq_category": "na", "taxid": "1851019", "species_taxid": "1851019", "organism_name": "Larsenimonas suaedae", "infraspecific_name": "strain=DSM 22428", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/13", "asm_name": "ASM2371210v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_023712105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/712/105/GCF_023712105.1_ASM2371210v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3222465", "genome_size_ungapped": "3222365", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023712105.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "2995", "protein_coding_gene_count": "2921", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-13", "dateModified": "2022-06-13", "datePublished": "2022-06-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Larsenimonas suaedae" ], "sample_taxid": [ "1851019" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.906 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3222465", "Number of Sequences": "8", "Longest Sequences (bp)": "1294462", "N50 (bp)": "803011", "Gap Ratio (%)": "0.003103", "GCcontent (%)": "59.5", "Number of CDSs": "2936", "Average Protein Length": "328.3", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Larsenimonas suaedae", "strain": "strain=DSM 22428", "accession": "GCA_023712105.1", "taxid": 1851019, "species_taxid": 1851019, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1067, "total_fragments": 1069, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Larsenimonas salina", "strain": "strain=CCM 8464", "accession": "GCA_023736155.1", "taxid": 1295565, "species_taxid": 1295565, "relation_to_type": "type", "validated": true, "ani": 95.5087, "matched_fragments": 956, "total_fragments": 1069, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Kushneria konosiri", "strain": "strain=X49", "accession": "GCA_002155145.1", "taxid": 698828, "species_taxid": 698828, "relation_to_type": "type", "validated": true, "ani": 78.2468, "matched_fragments": 236, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria indalinina", "strain": "strain=DSM 14324", "accession": "GCA_003385845.1", "taxid": 184067, "species_taxid": 184067, "relation_to_type": "type", "validated": true, "ani": 78.0893, "matched_fragments": 261, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", 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