{ "type": "genome", "identifier": "GCF_023740755.1", "organism": "Nocardia pulmonis", "title": "Nocardia pulmonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tibet University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023740755.1", "bioproject": "PRJNA224116", "biosample": "SAMN28906645", "wgs_master": "JAMRXG000000000.1", "refseq_category": "reference genome", "taxid": "2951408", "species_taxid": "2951408", "organism_name": "Nocardia pulmonis", "infraspecific_name": "strain=CDC141", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/15", "asm_name": "ASM2374075v1", "asm_submitter": "Tibet University", "gbrs_paired_asm": "GCA_023740755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/740/755/GCF_023740755.1_ASM2374075v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7864770", "genome_size_ungapped": "7864700", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023740755.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "7427", "protein_coding_gene_count": "7294", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-15", "dateModified": "2022-06-15", "datePublished": "2022-06-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia pulmonis" ], "sample_taxid": [ "2951408" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hainan" ], "sample_host_location_id": [], "data_size": "2.139 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7864770", "Number of Sequences": "50", "Longest Sequences (bp)": "794038", "N50 (bp)": "455918", "Gap Ratio (%)": "0.000890", "GCcontent (%)": "68.6", "Number of CDSs": "7447", "Average Protein Length": "316.6", "Coding Ratio (%)": "89.9", "Number of rRNAs": "5", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia pseudobrasiliensis", "strain": "strain=DSM 44290", "accession": "GCA_003350585.1", "taxid": 45979, "species_taxid": 45979, "relation_to_type": "type", "validated": true, "ani": 85.9521, "matched_fragments": 1804, "total_fragments": 2596, 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"organism_name": "Nocardia mexicana", "strain": "strain=DSM 44952", "accession": "GCA_003350525.1", "taxid": 279262, "species_taxid": 279262, "relation_to_type": "type", "validated": true, "ani": 82.5207, "matched_fragments": 1480, "total_fragments": 2596, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia veterana", "strain": "strain=NBRC 100344", "accession": "GCA_000308855.1", "taxid": 132249, "species_taxid": 132249, "relation_to_type": "type", "validated": true, "ani": 81.3994, "matched_fragments": 1143, "total_fragments": 2596, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia mikamii", "strain": "strain=NBRC 108933", "accession": "GCA_001613505.1", "taxid": 508464, "species_taxid": 508464, "relation_to_type": "type", "validated": true, "ani": 81.3666, "matched_fragments": 1194, "total_fragments": 2596, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia macrotermitis", "strain": 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