{ "type": "genome", "identifier": "GCF_023743255.1", "organism": "Rathayibacter rubneri", "title": "Rathayibacter rubneri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023743255.1", "bioproject": "PRJNA224116", "biosample": "SAMN28796265", "wgs_master": "JAMRYM000000000.1", "refseq_category": "reference genome", "taxid": "2950106", "species_taxid": "2950106", "organism_name": "Rathayibacter rubneri", "infraspecific_name": "strain=ZW T2_19", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/15", "asm_name": "ASM2374325v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_023743255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/743/255/GCF_023743255.1_ASM2374325v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4007079", "genome_size_ungapped": "4007079", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "213", "contig_count": "213", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023743255.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3879", "protein_coding_gene_count": "3766", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-15", "dateModified": "2022-06-15", "datePublished": "2022-06-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Rathayibacter rubneri" ], "sample_taxid": [ "2950106" ], "sample_host_organism": [ "Allium cepa (onion)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ 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"GCA_004366335.2", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 79.2191, "matched_fragments": 447, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 79.1253, "matched_fragments": 423, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 79.036, "matched_fragments": 408, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017355185.1", 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1239, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.176, "doubling_h": null, "growth_tmp": 27.5, "optimum_tmp": 26.5, "optimum_ph": null, "genome_size": 3072113.444, "gc_content": 65.5, "coding_genes": 2453.95, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rathayibacter", "rubneri" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }