{
    "type": "genome",
    "identifier": "GCF_023757665.1",
    "organism": "Rhizobium skierniewicense Ch11",
    "title": "Rhizobium skierniewicense Ch11",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "ISBM",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023757665.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10606665",
        "wgs_master": "RXPG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1368417",
        "species_taxid": "984260",
        "organism_name": "Rhizobium skierniewicense Ch11",
        "infraspecific_name": "strain=Ch11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/17",
        "asm_name": "ASM2375766v1",
        "asm_submitter": "ISBM",
        "gbrs_paired_asm": "GCA_023757665.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/757/665/GCF_023757665.1_ASM2375766v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4796547",
        "genome_size_ungapped": "4796169",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "31",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023757665.1-RS_2024_06_22",
        "annotation_date": "2024-06-22",
        "total_gene_count": "4590",
        "protein_coding_gene_count": "4452",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-17",
    "dateModified": "2022-06-17",
    "datePublished": "2022-06-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium skierniewicense Ch11"
        ],
        "sample_taxid": [
            "1368417"
        ],
        "sample_host_organism": [
            "Chrysanthemum sp."
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Poland: Czestochowa, Silesia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.359 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4796547",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "614595",
        "N50 (bp)": "353862",
        "Gap Ratio (%)": "0.007881",
        "GCcontent (%)": "56.9",
        "Number of CDSs": "4592",
        "Average Protein Length": "305.2",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Rhizobium skierniewicense",
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                "validated": true,
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                "ani_threshold": 95,
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                "species_taxid": 1972867,
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                "status": "below_threshold"
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            {
                "organism_name": "Agrobacterium bohemicum",
                "strain": "strain=R90",
                "accession": "GCA_002896715.1",
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                "species_taxid": 2052828,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Neorhizobium lilium",
                "strain": "strain=24NR",
                "accession": "GCA_004053875.1",
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                "species_taxid": 2503024,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
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                "ani_threshold": 95,
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            },
            {
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                "species_taxid": 57676,
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                "status": "below_threshold"
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        ],
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            "contamination": 0.0,
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                "accession": "GCF_014196515.1",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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    "_genome_taxon": [
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        "skierniewicense",
        "Ch11"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}