{ "type": "genome", "identifier": "GCF_023821985.2", "organism": "Dyadobacter chenhuakuii", "title": "Dyadobacter chenhuakuii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023821985.2", "bioproject": "PRJNA224116", "biosample": "SAMN29019757", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2909339", "species_taxid": "2909339", "organism_name": "Dyadobacter chenhuakuii", "infraspecific_name": "strain=CY22", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/12", "asm_name": "ASM2382198v2", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_023821985.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/821/985/GCF_023821985.2_ASM2382198v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6083856", "genome_size_ungapped": "6083856", "gc_percent": "46.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023821985.2-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5136", "protein_coding_gene_count": "5072", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-12", "dateModified": "2022-07-12", "datePublished": "2022-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter chenhuakuii" ], "sample_taxid": [ "2909339" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai" ], "sample_host_location_id": [], "data_size": "1.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6083856", "Number of Sequences": "2", "Longest Sequences (bp)": "5989234", "N50 (bp)": "5989234", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.8", "Number of CDSs": "5076", "Average Protein Length": "358.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "6", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, "relation_to_type": "type", "validated": true, "ani": 93.8199, "matched_fragments": 1718, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, "relation_to_type": "type", "validated": true, "ani": 83.6703, "matched_fragments": 1411, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 2572203, "relation_to_type": "type", "validated": true, "ani": 78.7211, "matched_fragments": 602, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter luticola", "strain": "strain=T17", "accession": "GCA_005860805.1", "taxid": 1979387, "species_taxid": 1979387, "relation_to_type": "type", "validated": true, "ani": 78.5276, "matched_fragments": 674, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter flavalbus", "strain": "strain=NS28", "accession": "GCA_006149045.1", "taxid": 2579942, "species_taxid": 2579942, "relation_to_type": "type", "validated": true, "ani": 78.3932, "matched_fragments": 600, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter crusticola", "strain": "strain=DSM 16708", "accession": "GCA_000701505.1", "taxid": 292407, "species_taxid": 292407, "relation_to_type": "type", "validated": true, "ani": 78.2311, "matched_fragments": 621, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter fermentans", "strain": "strain=DSM 18053", "accession": "GCA_000023125.1", "taxid": 94254, "species_taxid": 94254, "relation_to_type": "type", "validated": true, "ani": 78.131, "matched_fragments": 589, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter arcticus", "strain": "strain=DSM 102865", "accession": "GCA_011762185.1", "taxid": 1078754, "species_taxid": 1078754, "relation_to_type": "type", "validated": true, "ani": 78.047, "matched_fragments": 541, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 77.9981, "matched_fragments": 385, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter endophyticus", "strain": "strain=CGMCC 1.15288", "accession": "GCA_014641595.1", "taxid": 1749036, "species_taxid": 1749036, "relation_to_type": "type", "validated": true, "ani": 77.9205, "matched_fragments": 574, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter jiangsuensis", "strain": "strain=DSM 29057", "accession": "GCA_003014695.1", "taxid": 1591085, "species_taxid": 1591085, "relation_to_type": "type", "validated": true, "ani": 77.8893, "matched_fragments": 562, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter subterraneus", "strain": "strain=UP-52", "accession": "GCA_015221875.1", "taxid": 2773304, "species_taxid": 2773304, "relation_to_type": "type", "validated": true, "ani": 77.8757, "matched_fragments": 337, "total_fragments": 2027, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000428845.1", "gtdb_species": "s__Dyadobacter alkalitolerans", "ani": 93.8099, "matched_fragments": 1719, "total_fragments": 2027, "gtdb_taxonomy": 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