{ "type": "genome", "identifier": "GCF_023822005.2", "organism": "Dyadobacter fanqingshengii", "title": "Dyadobacter fanqingshengii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023822005.2", "bioproject": "PRJNA224116", "biosample": "SAMN29019767", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2906443", "species_taxid": "2906443", "organism_name": "Dyadobacter fanqingshengii", "infraspecific_name": "strain=CY399", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/12", "asm_name": "ASM2382200v2", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_023822005.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/822/005/GCF_023822005.2_ASM2382200v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6272774", "genome_size_ungapped": "6272774", "gc_percent": "45.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023822005.2-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5293", "protein_coding_gene_count": "5224", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-12", "dateModified": "2022-07-12", "datePublished": "2022-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter fanqingshengii" ], "sample_taxid": [ "2906443" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai" ], "sample_host_location_id": [], "data_size": "1.780 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6272774", "Number of Sequences": "2", "Longest Sequences (bp)": "6251631", "N50 (bp)": "6251631", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.2", "Number of CDSs": "5202", "Average Protein Length": "364.0", "Coding Ratio (%)": "90.6", "Number of rRNAs": "6", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter arcticus", "strain": "strain=DSM 102865", "accession": "GCA_011762185.1", "taxid": 1078754, "species_taxid": 1078754, "relation_to_type": "type", "validated": true, "ani": 78.2824, "matched_fragments": 588, "total_fragments": 2090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter crusticola", "strain": "strain=DSM 16708", "accession": "GCA_000701505.1", "taxid": 292407, "species_taxid": 292407, "relation_to_type": "type", "validated": true, "ani": 78.1578, "matched_fragments": 575, "total_fragments": 2090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter endophyticus", "strain": "strain=CGMCC 1.15288", "accession": "GCA_014641595.1", "taxid": 1749036, "species_taxid": 1749036, "relation_to_type": "type", "validated": true, "ani": 78.0617, "matched_fragments": 564, "total_fragments": 2090, "ani_threshold": 95, "status": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dyadobacter", "fanqingshengii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }