{ "type": "genome", "identifier": "GCF_023822065.1", "organism": "Sphingomonas morindae", "title": "Sphingomonas morindae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of Chemistry and Biological Engineering", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023822065.1", "bioproject": "PRJNA224116", "biosample": "SAMN22218079", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1541170", "species_taxid": "1541170", "organism_name": "Sphingomonas morindae", "infraspecific_name": "strain=NBD5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/21", "asm_name": "ASM2382206v1", "asm_submitter": "School of Chemistry and Biological Engineering", "gbrs_paired_asm": "GCA_023822065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/822/065/GCF_023822065.1_ASM2382206v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4239716", "genome_size_ungapped": "4239716", "gc_percent": "69.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023822065.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "4003", "protein_coding_gene_count": "3903", "non_coding_gene_count": "63", "pubmed_id": "35622580" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-21", "dateModified": "2022-06-21", "datePublished": "2022-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas morindae" ], "sample_taxid": [ "1541170" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan" ], "sample_host_location_id": [], "data_size": "1.132 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4239716", "Number of Sequences": "4", "Longest Sequences (bp)": "3491786", "N50 (bp)": "3491786", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "3998", "Average Protein Length": "323.6", "Coding Ratio (%)": "91.6", "Number of rRNAs": "9", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, 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"organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 78.6836, "matched_fragments": 445, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 78.5986, "matched_fragments": 590, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 78.5551, "matched_fragments": 440, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 78.4586, "matched_fragments": 600, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas horti", "strain": "strain=MAH-20", "accession": "GCA_009753715.1", "taxid": 2682842, "species_taxid": 2682842, "relation_to_type": "type", "validated": true, "ani": 78.4476, "matched_fragments": 399, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 78.425, "matched_fragments": 587, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella ginsenosidimutans", "strain": "strain=BS-11", "accession": "GCA_007995055.1", 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