{ "type": "genome", "identifier": "GCF_023823685.1", "organism": "Pseudomonas subflava", "title": "Pseudomonas subflava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023823685.1", "bioproject": "PRJNA224116", "biosample": "SAMN29132573", "wgs_master": "JAMXBF000000000.1", "refseq_category": "reference genome", "taxid": "2952933", "species_taxid": "2952933", "organism_name": "Pseudomonas subflava", "infraspecific_name": "strain=YIM B01952", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/21", "asm_name": "ASM2382368v1", "asm_submitter": "Yunnan Institute of Microbiology", "gbrs_paired_asm": "GCA_023823685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/823/685/GCF_023823685.1_ASM2382368v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4435705", "genome_size_ungapped": "4435705", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023823685.1-RS_2024_06_25", "annotation_date": "2024-06-25", "total_gene_count": "4241", "protein_coding_gene_count": "4145", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-21", "dateModified": "2022-06-21", "datePublished": "2022-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas subflava" ], "sample_taxid": [ "2952933" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.210 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4435705", "Number of Sequences": "31", "Longest Sequences (bp)": "703279", "N50 (bp)": "478085", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "4181", "Average Protein Length": "318.5", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 88.8853, "matched_fragments": 1125, 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"below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 84.4609, "matched_fragments": 902, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 84.0982, "matched_fragments": 987, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 83.9099, "matched_fragments": 971, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"GCA_004745455.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 83.84, "matched_fragments": 1003, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 83.8088, "matched_fragments": 991, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 83.6013, "matched_fragments": 953, "total_fragments": 1466, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, 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