{ "type": "genome", "identifier": "GCF_023898865.1", "organism": "Pseudonocardia humida", "title": "Pseudonocardia humida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023898865.1", "bioproject": "PRJNA224116", "biosample": "SAMN18780209", "wgs_master": "JAGSOV000000000.1", "refseq_category": "reference genome", "taxid": "2800819", "species_taxid": "2800819", "organism_name": "Pseudonocardia humida", "infraspecific_name": "strain=S2-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/24", "asm_name": "ASM2389886v1", "asm_submitter": "Nanjing Normal University", "gbrs_paired_asm": "GCA_023898865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/898/865/GCF_023898865.1_ASM2389886v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8287167", "genome_size_ungapped": "8287167", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "129", "contig_count": "129", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023898865.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8036", "protein_coding_gene_count": "7830", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-24", "dateModified": "2022-06-24", "datePublished": "2022-06-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudonocardia humida" ], "sample_taxid": [ "2800819" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan" ], "sample_host_location_id": [], "data_size": "2.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8287167", "Number of Sequences": "129", "Longest Sequences (bp)": "347740", "N50 (bp)": "110287", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.6", "Number of CDSs": "7969", "Average Protein Length": "308.7", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 81.0457, "matched_fragments": 1173, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia broussonetiae", "strain": "strain=Gen 01", "accession": "GCA_013155125.1", "taxid": 2736640, "species_taxid": 2736640, "relation_to_type": "type", "validated": true, "ani": 80.749, "matched_fragments": 1362, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia oceani", "strain": "strain=KRD185", "accession": "GCA_019263585.2", "taxid": 2792013, "species_taxid": 2792013, "relation_to_type": "type", "validated": true, "ani": 80.7162, "matched_fragments": 1302, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia kunmingensis", "strain": "strain=DSM 45301", "accession": "GCA_006716445.1", "taxid": 630975, "species_taxid": 630975, "relation_to_type": "type", "validated": true, "ani": 80.6512, "matched_fragments": 1435, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia petroleophila", "strain": "strain=CGMCC 4.1532", "accession": "GCA_014235185.1", "taxid": 37331, "species_taxid": 37331, "relation_to_type": "type", "validated": true, "ani": 80.6295, "matched_fragments": 1273, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia xinjiangensis", "strain": "strain=JCM 11839", "accession": "GCA_012911925.1", "taxid": 75289, "species_taxid": 75289, "relation_to_type": "type", "validated": true, "ani": 80.4856, "matched_fragments": 1270, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia abyssalis", "strain": "strain=KRD168", "accession": "GCA_019263705.2", "taxid": 2792008, "species_taxid": 2792008, "relation_to_type": "type", "validated": true, "ani": 80.4111, "matched_fragments": 1235, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia nigra", "strain": "strain=DSM 104088", "accession": "GCA_019396355.1", "taxid": 1921578, "species_taxid": 1921578, "relation_to_type": "type", "validated": true, "ani": 80.3569, "matched_fragments": 1311, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia cypriaca", "strain": "strain=DSM 45511", "accession": "GCA_006717045.1", "taxid": 882449, "species_taxid": 882449, "relation_to_type": "type", "validated": true, "ani": 80.279, "matched_fragments": 1412, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia bannensis", "strain": "strain=DSM 45300", "accession": "GCA_012911875.1", "taxid": 630973, "species_taxid": 630973, "relation_to_type": "type", "validated": true, "ani": 80.1467, "matched_fragments": 1035, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia acidicola", "strain": "strain=K10HN5", "accession": "GCA_012911935.1", "taxid": 2724939, "species_taxid": 2724939, "relation_to_type": "type", "validated": true, "ani": 80.0811, "matched_fragments": 1135, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia alaniniphila", "strain": "strain=Y-16303", "accession": "GCA_022524485.1", "taxid": 75291, "species_taxid": 75291, "relation_to_type": "type", "validated": true, "ani": 80.0316, "matched_fragments": 1256, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia sulfidoxydans", "strain": "strain=NBRC 16205", "accession": "GCA_007989085.1", "taxid": 54011, "species_taxid": 54011, "relation_to_type": "type", "validated": true, "ani": 79.2926, "matched_fragments": 1054, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia dioxanivorans", "strain": "strain=CB1190", "accession": "GCA_000196675.2", "taxid": 240495, "species_taxid": 240495, "relation_to_type": "type", "validated": true, "ani": 79.1494, "matched_fragments": 1198, "total_fragments": 2697, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018531445.1", "gtdb_species": "s__Pseudonocardia sp018531445", "ani": 89.6089, "matched_fragments": 1878, "total_fragments": 2697, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Pseudonocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006539565.1", "gtdb_species": "s__Pseudonocardia hydrocarbonoxydans", "ani": 81.0869, "matched_fragments": 1166, "total_fragments": 2697, 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