{
    "type": "genome",
    "identifier": "GCF_024022995.1",
    "organism": "Thermococcus aggregans",
    "title": "Thermococcus aggregans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Institute of Ocean Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024022995.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN29154529",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "110163",
        "species_taxid": "110163",
        "organism_name": "Thermococcus aggregans",
        "infraspecific_name": "strain=TY",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/29",
        "asm_name": "ASM2402299v1",
        "asm_submitter": "Korea Institute of Ocean Science and Technology",
        "gbrs_paired_asm": "GCA_024022995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/022/995/GCF_024022995.1_ASM2402299v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1889207",
        "genome_size_ungapped": "1889107",
        "gc_percent": "43.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024022995.1-RS_2024_07_15",
        "annotation_date": "2024-07-15",
        "total_gene_count": "2091",
        "protein_coding_gene_count": "2005",
        "non_coding_gene_count": "52",
        "pubmed_id": "9828419"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-29",
    "dateModified": "2022-06-29",
    "datePublished": "2022-06-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermococcus aggregans"
        ],
        "sample_taxid": [
            "110163"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico"
        ],
        "sample_host_location_id": [],
        "data_size": "0.537 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1889107",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1889107",
        "N50 (bp)": "1889107",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.3",
        "Number of CDSs": "2022",
        "Average Protein Length": "282.3",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
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                "organism_name": "Thermococcus aggregans",
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            {
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                "species_taxid": 139207,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "species_taxid": 2265,
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                "status": "below_threshold"
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            {
                "organism_name": "Thermococcus sibiricus",
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                "species_taxid": 172049,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus bergensis",
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                "accession": "GCA_020386975.1",
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                "species_taxid": 2689387,
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                "ani": 80.5223,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus paralvinellae",
                "strain": "strain=ES1",
                "accession": "GCA_000517445.1",
                "taxid": 582419,
                "species_taxid": 582419,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5475,
                "matched_fragments": 125,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus peptonophilus",
                "strain": "strain=OG-1",
                "accession": "GCA_001592435.1",
                "taxid": 53952,
                "species_taxid": 53952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3665,
                "matched_fragments": 60,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000246985.2",
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                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "96.93",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_001484685.1",
                "gtdb_species": "s__Thermococcus_A sp001484685",
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                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
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                "mean_intra_species_ani": "98.39",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003663525.1",
                "gtdb_species": "s__Thermococcus_A sp003663525",
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                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
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            },
            {
                "accession": "GCF_000430485.1",
                "gtdb_species": "s__Thermococcus_A sp000430485",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_001592435.1",
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                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
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        ]
    },
    "_bac2feature": {
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        "cell_length": 0.06,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "aggregans"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}