{ "type": "genome", "identifier": "GCF_024054565.1", "organism": "Aeoliella straminimaris", "title": "Aeoliella straminimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Faculty of Sciencies of University of Porto", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024054565.1", "bioproject": "PRJNA224116", "biosample": "SAMN29248165", "wgs_master": "JAMXLR000000000.1", "refseq_category": "reference genome", "taxid": "2954799", "species_taxid": "2954799", "organism_name": "Aeoliella straminimaris", "infraspecific_name": "strain=ICT_H6.2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/29", "asm_name": "ASM2405456v1", "asm_submitter": "Faculty of Sciencies of University of Porto", "gbrs_paired_asm": "GCA_024054565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/054/565/GCF_024054565.1_ASM2405456v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7796805", "genome_size_ungapped": "7796805", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024054565.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "6017", "protein_coding_gene_count": "5913", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-29", "dateModified": "2022-06-29", "datePublished": "2022-06-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeoliella straminimaris" ], "sample_taxid": [ "2954799" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Alcochete" ], "sample_host_location_id": [], "data_size": "2.215 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7796805", "Number of Sequences": "98", "Longest Sequences (bp)": "808781", "N50 (bp)": "255444", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "6030", "Average Protein Length": "362.7", "Coding Ratio (%)": "84.2", "Number of rRNAs": "3", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeoliella mucimassa", "strain": "strain=Pan181", "accession": "GCA_007748035.1", "taxid": 2527972, "species_taxid": 2527972, "relation_to_type": "type", "validated": true, "ani": 77.5681, "matched_fragments": 522, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas corsicana", "strain": "strain=KOR34", "accession": "GCA_007859765.1", "taxid": 1938618, "species_taxid": 1938618, "relation_to_type": "type", "validated": true, "ani": 77.1911, "matched_fragments": 328, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas polymericola", "strain": "strain=Pla123a", "accession": "GCA_007859935.1", "taxid": 2528002, "species_taxid": 2528002, "relation_to_type": "type", "validated": true, "ani": 77.122, "matched_fragments": 328, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobythopirellula maris", "strain": "strain=Mal64", "accession": "GCA_007859945.1", "taxid": 2527991, "species_taxid": 2527991, "relation_to_type": "type", "validated": true, "ani": 76.9678, "matched_fragments": 257, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pirellulimonas nuda", "strain": "strain=Pla175", "accession": "GCA_007750855.1", "taxid": 2528009, "species_taxid": 2528009, "relation_to_type": "type", "validated": true, "ani": 76.9049, "matched_fragments": 266, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botrimarina colliarenosi", "strain": "strain=Pla108", "accession": "GCA_007859955.1", "taxid": 2528001, "species_taxid": 2528001, "relation_to_type": "type", "validated": true, "ani": 76.8036, "matched_fragments": 211, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula limnantheis", "strain": "strain=I41", "accession": "GCA_007746075.1", "taxid": 2528024, "species_taxid": 2528024, "relation_to_type": "type", "validated": true, "ani": 76.3084, "matched_fragments": 158, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula parvula", "strain": "strain=PX69", "accession": "GCA_009177095.1", "taxid": 2650471, "species_taxid": 2650471, "relation_to_type": "type", "validated": true, "ani": 76.2898, "matched_fragments": 184, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiconus nitratireducens", "strain": "strain=JC645", "accession": "GCA_008629675.1", "taxid": 2605748, "species_taxid": 2605748, "relation_to_type": "type", "validated": true, "ani": 75.6828, "matched_fragments": 67, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum argentinense", "strain": "strain=Az39", "accession": "GCA_000632475.2", "taxid": 2970906, "species_taxid": 2970906, "relation_to_type": "type", "validated": true, "ani": 74.6955, "matched_fragments": 57, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces broussonetiae", "strain": "strain=T44", "accession": "GCA_009796285.1", "taxid": 2686304, "species_taxid": 2686304, "relation_to_type": "type", "validated": true, "ani": 74.6542, "matched_fragments": 50, "total_fragments": 2553, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007748035.1", "gtdb_species": "s__Aeoliella mucimassa", "ani": 77.5635, "matched_fragments": 522, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Aeoliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007859765.1", "gtdb_species": "s__Posidoniimonas corsicana", "ani": 77.208, "matched_fragments": 326, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Posidoniimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007859935.1", "gtdb_species": "s__Posidoniimonas polymericola", "ani": 77.1463, "matched_fragments": 325, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Posidoniimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007859945.1", "gtdb_species": "s__Pseudobythopirellula maris", "ani": 76.968, "matched_fragments": 257, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Pseudobythopirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007750855.1", "gtdb_species": "s__Pirellulimonas nuda", "ani": 76.9049, "matched_fragments": 266, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Pirellulimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007745835.1", "gtdb_species": "s__Botrimarina sp007745835", "ani": 76.8319, "matched_fragments": 217, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Botrimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007859955.1", "gtdb_species": "s__Botrimarina colliarenosi", "ani": 76.8042, "matched_fragments": 211, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Botrimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002702655.1", "gtdb_species": "s__GCA-2702655 sp002702655", "ani": 76.7979, "matched_fragments": 278, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__GCA-2702655", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003576855.1", "gtdb_species": "s__Lacipirellula sp003576855", "ani": 76.3398, "matched_fragments": 153, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009177095.1", "gtdb_species": "s__Lacipirellula parvula", "ani": 76.3064, "matched_fragments": 181, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822725.1", "gtdb_species": "s__Lacipirellula sp013822725", "ani": 76.1811, "matched_fragments": 115, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Lacipirellulaceae;g__Lacipirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016872925.1", "gtdb_species": "s__QWPN01 sp016872925", "ani": 75.8524, "matched_fragments": 76, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012515235.1", "gtdb_species": "s__Anammoximicrobium sp012515235", "ani": 75.5311, "matched_fragments": 88, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Anammoximicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003455945.1", "gtdb_species": "s__UBA11682 sp003455945", "ani": 75.0665, "matched_fragments": 63, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__UBA11682", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009796285.1", "gtdb_species": "s__Streptomyces broussonetiae", "ani": 74.6542, "matched_fragments": 50, "total_fragments": 2553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Aeoliella", "straminimaris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }