{ "type": "genome", "identifier": "GCF_024055665.1", "organism": "Ideonella oryzae", "title": "Ideonella oryzae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024055665.1", "bioproject": "PRJNA224116", "biosample": "SAMN27734155", "wgs_master": "JAMXMC000000000.1", "refseq_category": "reference genome", "taxid": "2937441", "species_taxid": "2937441", "organism_name": "Ideonella oryzae", "infraspecific_name": "strain=NS12-5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/29", "asm_name": "ASM2405566v1", "asm_submitter": "Dongguk University", "gbrs_paired_asm": "GCA_024055665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/055/665/GCF_024055665.1_ASM2405566v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4704456", "genome_size_ungapped": "4704256", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024055665.1-RS_2024_07_08", "annotation_date": "2024-07-08", "total_gene_count": "4377", "protein_coding_gene_count": "4281", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-29", "dateModified": "2022-06-29", "datePublished": "2022-06-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Ideonella oryzae" ], "sample_taxid": [ "2937441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4704456", "Number of Sequences": "31", "Longest Sequences (bp)": "546336", "N50 (bp)": "381762", "Gap Ratio (%)": "0.004251", "GCcontent (%)": "69.0", "Number of CDSs": "4311", "Average Protein Length": "336.5", "Coding Ratio (%)": "92.5", "Number of rRNAs": "4", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 92.3239, "matched_fragments": 1290, "total_fragments": 1554, "ani_threshold": 95, 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"accession": "GCA_003933735.1", "taxid": 2493092, "species_taxid": 2493092, "relation_to_type": "type", "validated": true, "ani": 79.8798, "matched_fragments": 562, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 79.4981, "matched_fragments": 611, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella brevitalea", "strain": "strain=DSM 7029", "accession": "GCA_001017435.1", "taxid": 413882, "species_taxid": 413882, "relation_to_type": "type", "validated": true, "ani": 79.0285, "matched_fragments": 598, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira goensis", "strain": "strain=JA135", "accession": "GCA_014197795.1", "taxid": 391922, 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