{ "type": "genome", "identifier": "GCF_024055725.1", "organism": "Actinoallomurus spadix", "title": "Actinoallomurus spadix", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024055725.1", "bioproject": "PRJNA224116", "biosample": "SAMN28911400", "wgs_master": "JAMXMX000000000.1", "refseq_category": "reference genome", "taxid": "79912", "species_taxid": "79912", "organism_name": "Actinoallomurus spadix", "infraspecific_name": "strain=KCTC 9252", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/29", "asm_name": "ASM2405572v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_024055725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/055/725/GCF_024055725.1_ASM2405572v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8025068", "genome_size_ungapped": "8025068", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024055725.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "7464", "protein_coding_gene_count": "7333", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-29", "dateModified": "2022-06-29", "datePublished": "2022-06-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoallomurus spadix" ], "sample_taxid": [ "79912" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "2.157 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8025068", "Number of Sequences": "72", "Longest Sequences (bp)": "467626", "N50 (bp)": "265246", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "7436", "Average Protein Length": "316.3", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2638, "total_fragments": 2643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoallomurus purpureus", "strain": "strain=KCTC 19541", "accession": "GCA_024055795.1", "taxid": 478114, "species_taxid": 478114, "relation_to_type": "type", "validated": true, "ani": 86.7376, "matched_fragments": 1790, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus bryophytorum", "strain": "strain=DSM 102200", "accession": "GCA_006716425.1", "taxid": 1490222, "species_taxid": 1490222, "relation_to_type": "type", "validated": true, "ani": 81.1183, "matched_fragments": 1396, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 78.9626, "matched_fragments": 1176, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora catenispora", "strain": "strain=3-22-3", "accession": "GCA_006363815.1", "taxid": 2493090, "species_taxid": 2493090, "relation_to_type": "type", "validated": true, "ani": 78.8783, "matched_fragments": 819, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=ATCC BAA-277", "accession": "GCA_012396395.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 78.8403, "matched_fragments": 1014, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 78.81, "matched_fragments": 1240, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=NBRC 106108", "accession": "GCA_001552195.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 78.7549, "matched_fragments": 1045, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura namibiensis", "strain": "strain=DSM 44197", "accession": "GCA_014138665.1", "taxid": 182080, "species_taxid": 182080, "relation_to_type": "type", "validated": true, "ani": 78.7079, "matched_fragments": 1140, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura kijaniata", "strain": "strain=NBRC 14229", "accession": "GCA_001552175.1", "taxid": 46161, "species_taxid": 46161, "relation_to_type": "type", "validated": true, "ani": 78.6968, "matched_fragments": 1134, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura viridis", "strain": "strain=DSM 43175", "accession": "GCA_015751755.1", "taxid": 58110, "species_taxid": 58110, "relation_to_type": "type", "validated": true, "ani": 78.6562, "matched_fragments": 1088, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 78.6039, "matched_fragments": 1089, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 78.5119, "matched_fragments": 1022, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura flavalba", "strain": "strain=DSM 45200", "accession": "GCA_000374305.1", "taxid": 1120938, "species_taxid": 1120938, "relation_to_type": "type", "validated": true, "ani": 78.4835, "matched_fragments": 932, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura atramentaria", "strain": "strain=SF2197", "accession": "GCA_000381885.1", "taxid": 1990, "species_taxid": 1990, "relation_to_type": "type", "validated": true, "ani": 78.4397, "matched_fragments": 950, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 78.4077, "matched_fragments": 1102, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura decatromicini", "strain": "strain=CYP1-5", "accession": "GCA_008121305.1", "taxid": 2604572, "species_taxid": 2604572, "relation_to_type": "type", "validated": true, "ani": 78.3384, "matched_fragments": 1102, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 78.2376, "matched_fragments": 901, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinocrinis puniceicyclus", "strain": "strain=DSM 45618", "accession": "GCA_018283645.1", "taxid": 977794, "species_taxid": 977794, "relation_to_type": "type", "validated": true, "ani": 76.7021, "matched_fragments": 518, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinospica robiniae", "strain": "strain=DSM 44927", "accession": "GCA_000504285.1", "taxid": 304901, "species_taxid": 304901, "relation_to_type": "type", "validated": true, "ani": 76.4264, "matched_fragments": 693, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter keddieii", "strain": "strain=DSM 10542", "accession": "GCA_000024925.1", "taxid": 60920, "species_taxid": 60920, "relation_to_type": "type", "validated": true, "ani": 76.2227, "matched_fragments": 349, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 76.1022, "matched_fragments": 382, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006716425.1", "gtdb_species": "s__Actinoallomurus bryophytorum", "ani": 81.079, "matched_fragments": 1405, "total_fragments": 2643, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinoallomurus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003589885.1", "gtdb_species": "s__Thermomonospora amylolytica", "ani": 79.2542, "matched_fragments": 929, "total_fragments": 2643, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003001795.1", "gtdb_species": "s__Actinomadura_B viridilutea", "ani": 79.0501, "matched_fragments": 971, "total_fragments": 2643, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinomadura_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004349245.1", "gtdb_species": "s__Spirillospora sp004349245", "ani": 78.9886, "matched_fragments": 937, "total_fragments": 2643, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008923365.1", "gtdb_species": "s__Spirillospora montaniterrae", "ani": 78.9886, "matched_fragments": 1166, "total_fragments": 2643, "gtdb_taxonomy": 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