{
    "type": "genome",
    "identifier": "GCF_024125445.1",
    "organism": "Sporolactobacillus shoreicorticis",
    "title": "Sporolactobacillus shoreicorticis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024125445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN28818707",
        "wgs_master": "JAMXWM000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1923877",
        "species_taxid": "1923877",
        "organism_name": "Sporolactobacillus shoreicorticis",
        "infraspecific_name": "strain=LMG 29111",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/02",
        "asm_name": "ASM2412544v1",
        "asm_submitter": "Chulalongkorn University",
        "gbrs_paired_asm": "GCA_024125445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/125/445/GCF_024125445.1_ASM2412544v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4459629",
        "genome_size_ungapped": "4459629",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "115",
        "contig_count": "115",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024125445.1-RS_2024_09_08",
        "annotation_date": "2024-09-08",
        "total_gene_count": "4506",
        "protein_coding_gene_count": "4331",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-02",
    "dateModified": "2022-07-02",
    "datePublished": "2022-07-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sporolactobacillus shoreicorticis"
        ],
        "sample_taxid": [
            "1923877"
        ],
        "sample_host_organism": [
            "Shorea obtusa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand:Mahasarakham"
        ],
        "sample_host_location_id": [],
        "data_size": "1.274 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4459629",
        "Number of Sequences": "115",
        "Longest Sequences (bp)": "337468",
        "N50 (bp)": "120750",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.2",
        "Number of CDSs": "4427",
        "Average Protein Length": "275.6",
        "Coding Ratio (%)": "82.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sporolactobacillus shoreicorticis",
                "strain": "strain=LMG 29111",
                "accession": "GCA_024125445.1",
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                "species_taxid": 1923877,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1436,
                "total_fragments": 1438,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sporolactobacillus nakayamae",
                "strain": "strain=ATCC 700379",
                "accession": "GCA_900113325.1",
                "taxid": 269670,
                "species_taxid": 269670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7369,
                "matched_fragments": 619,
                "total_fragments": 1438,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporolactobacillus laevolacticus",
                "strain": "strain=DSM 442",
                "accession": "GCA_000497245.1",
                "taxid": 33018,
                "species_taxid": 33018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9947,
                "matched_fragments": 369,
                "total_fragments": 1438,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporolactobacillus shoreae",
                "strain": "strain=BK92",
                "accession": "GCA_004684935.1",
                "taxid": 1465501,
                "species_taxid": 1465501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8071,
                "matched_fragments": 173,
                "total_fragments": 1438,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporolactobacillus pectinivorans",
                "strain": "strain=GD201205",
                "accession": "GCA_002802965.1",
                "taxid": 1591408,
                "species_taxid": 1591408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7405,
                "matched_fragments": 150,
                "total_fragments": 1438,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900113325.1",
                "gtdb_species": "s__Sporolactobacillus nakayamae",
                "ani": 80.7025,
                "matched_fragments": 623,
                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000497245.1",
                "gtdb_species": "s__Sporolactobacillus laevolacticus",
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                "matched_fragments": 369,
                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004684935.1",
                "gtdb_species": "s__Sporolactobacillus shoreae",
                "ani": 78.8065,
                "matched_fragments": 173,
                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002802965.1",
                "gtdb_species": "s__Sporolactobacillus pectinivorans",
                "ani": 77.7334,
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                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004153195.1",
                "gtdb_species": "s__Sporolactobacillus sp004153195",
                "ani": 77.4411,
                "matched_fragments": 113,
                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004153165.1",
                "gtdb_species": "s__Sporolactobacillus sp004153165",
                "ani": 77.4214,
                "matched_fragments": 110,
                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004153225.1",
                "gtdb_species": "s__Sporolactobacillus sp004153225",
                "ani": 77.1039,
                "matched_fragments": 78,
                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900543345.1",
                "gtdb_species": "s__Sporolactobacillus sp900543345",
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                "total_fragments": 1438,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Sporolactobacillaceae;g__Sporolactobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.271,
        "cell_length": 0.314,
        "doubling_h": null,
        "growth_tmp": 30.857,
        "optimum_tmp": 36.6,
        "optimum_ph": 5.625,
        "genome_size": 3241710.4,
        "gc_content": 45.042,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.285,
        "aerobic_respiration": 0.571,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sporolactobacillus",
        "shoreicorticis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}