{ "type": "genome", "identifier": "GCF_024134545.1", "organism": "Nocardiopsis exhalans", "title": "Nocardiopsis exhalans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hunan University of Arts and Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024134545.1", "bioproject": "PRJNA224116", "biosample": "SAMN28990677", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "163604", "species_taxid": "163604", "organism_name": "Nocardiopsis exhalans", "infraspecific_name": "strain=JCM11759T", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/04", "asm_name": "ASM2413454v1", "asm_submitter": "Hunan University of Arts and Science", "gbrs_paired_asm": "GCA_024134545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/134/545/GCF_024134545.1_ASM2413454v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7597621", "genome_size_ungapped": "7597621", "gc_percent": "69.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024134545.1-RS_2024_07_13", "annotation_date": "2024-07-13", "total_gene_count": "6868", "protein_coding_gene_count": "6700", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-04", "dateModified": "2022-07-04", "datePublished": "2022-07-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis exhalans" ], "sample_taxid": [ "163604" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Changde" ], "sample_host_location_id": [], "data_size": "2.058 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7597621", "Number of Sequences": "2", "Longest Sequences (bp)": "7506724", "N50 (bp)": "7506724", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "7010", "Average Protein Length": "311.0", "Coding Ratio (%)": "86.1", "Number of rRNAs": "15", "Number of tRNAs": "67", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2532, "total_fragments": 2532, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis valliformis", "strain": "strain=DSM 45023", "accession": "GCA_000340985.1", "taxid": 239974, "species_taxid": 239974, "relation_to_type": "type", "validated": true, "ani": 96.211, "matched_fragments": 1981, "total_fragments": 2532, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis metallicus", "strain": "strain=DSM 44598", "accession": "GCA_014201115.1", "taxid": 179819, "species_taxid": 179819, "relation_to_type": "type", "validated": true, "ani": 95.4653, "matched_fragments": 2083, "total_fragments": 2532, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis ganjiahuensis", "strain": "strain=DSM 45031", "accession": "GCA_000341085.1", "taxid": 239984, "species_taxid": 239984, "relation_to_type": "type", "validated": true, "ani": 89.5183, "matched_fragments": 1750, "total_fragments": 2532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=KCTC 19431", "accession": "GCA_014651695.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 87.6885, "matched_fragments": 1570, "total_fragments": 2532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=DSM 45157", "accession": "GCA_014874035.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 87.6817, "matched_fragments": 1582, "total_fragments": 2532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis prasina", "strain": "strain=DSM 43845", "accession": "GCA_000341265.1", "taxid": 2015, "species_taxid": 2015, "relation_to_type": "type", "validated": true, "ani": 87.2434, "matched_fragments": 1467, "total_fragments": 2532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": 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