{
    "type": "genome",
    "identifier": "GCF_024138775.1",
    "organism": "Corynebacterium aurimucosum",
    "title": "Corynebacterium aurimucosum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northumbria University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024138775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18253773",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "169292",
        "species_taxid": "169292",
        "organism_name": "Corynebacterium aurimucosum",
        "infraspecific_name": "strain=DSM 44532",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/05",
        "asm_name": "ASM2413877v1",
        "asm_submitter": "Northumbria University",
        "gbrs_paired_asm": "GCA_024138775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/138/775/GCF_024138775.1_ASM2413877v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2683765",
        "genome_size_ungapped": "2677965",
        "gc_percent": "60.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024138775.1-RS_2024_07_15",
        "annotation_date": "2024-07-15",
        "total_gene_count": "2562",
        "protein_coding_gene_count": "2440",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-05",
    "dateModified": "2022-07-05",
    "datePublished": "2022-07-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium aurimucosum"
        ],
        "sample_taxid": [
            "169292"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Bronchitis"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.758 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2683665",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2683665",
        "N50 (bp)": "2683665",
        "Gap Ratio (%)": "0.212433",
        "GCcontent (%)": "60.5",
        "Number of CDSs": "2501",
        "Average Protein Length": "318.1",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Corynebacterium aurimucosum",
                "strain": "strain=DSM 44532",
                "accession": "GCA_024138775.1",
                "taxid": 169292,
                "species_taxid": 169292,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 893,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium aurimucosum",
                "strain": "strain=FDAARGOS_1109",
                "accession": "GCA_016728705.1",
                "taxid": 169292,
                "species_taxid": 169292,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9128,
                "matched_fragments": 884,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=NCTC10288",
                "accession": "GCA_900478045.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0573,
                "matched_fragments": 671,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=NBRC 15361",
                "accession": "GCA_001552395.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.051,
                "matched_fragments": 649,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=ATCC 23348",
                "accession": "GCA_000805675.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9831,
                "matched_fragments": 654,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium singulare",
                "strain": "strain=IBS B52218",
                "accession": "GCA_000833575.1",
                "taxid": 161899,
                "species_taxid": 161899,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5013,
                "matched_fragments": 647,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium tuberculostearicum",
                "strain": "strain=DSM 44922",
                "accession": "GCA_013408445.1",
                "taxid": 38304,
                "species_taxid": 38304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9506,
                "matched_fragments": 362,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium tuberculostearicum",
                "strain": "strain=FDAARGOS_1117",
                "accession": "GCA_016728365.1",
                "taxid": 38304,
                "species_taxid": 38304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9281,
                "matched_fragments": 366,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016728705.1",
                "gtdb_species": "s__Corynebacterium sp001807205",
                "ani": 99.917,
                "matched_fragments": 883,
                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "96.83",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000022905.1",
                "gtdb_species": "s__Corynebacterium aurimucosum",
                "ani": 93.2986,
                "matched_fragments": 811,
                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001836165.1",
                "gtdb_species": "s__Corynebacterium sp001836165",
                "ani": 92.4133,
                "matched_fragments": 761,
                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019114925.1",
                "gtdb_species": "s__Corynebacterium faecipullorum",
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                "matched_fragments": 550,
                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000988205.1",
                "gtdb_species": "s__Corynebacterium minutissimum_A",
                "ani": 89.6756,
                "matched_fragments": 748,
                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.53",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_002861385.1",
                "gtdb_species": "s__Corynebacterium aurimucosum_C",
                "ani": 89.1423,
                "matched_fragments": 739,
                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "96.50",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 28,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 36.5,
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        "optimum_ph": 7.292,
        "genome_size": 2679570.444,
        "gc_content": 58.786,
        "coding_genes": 2543.0,
        "rRNA16S_genes": 3.0,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Corynebacterium",
        "aurimucosum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}