{ "type": "genome", "identifier": "GCF_024158125.1", "organism": "Futiania mangrovi", "title": "Futiania mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenzhen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024158125.1", "bioproject": "PRJNA224116", "biosample": "SAMN29407687", "wgs_master": "JAMZFT000000000.1", "refseq_category": "reference genome", "taxid": "2959716", "species_taxid": "2959716", "organism_name": "Futiania mangrovi", "infraspecific_name": "strain=FT118", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/05", "asm_name": "ASM2415812v1", "asm_submitter": "Shenzhen University", "gbrs_paired_asm": "GCA_024158125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/158/125/GCF_024158125.1_ASM2415812v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3397356", "genome_size_ungapped": "3397356", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024158125.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3253", "protein_coding_gene_count": "3187", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-05", "dateModified": "2022-07-05", "datePublished": "2022-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Futiania mangrovi" ], "sample_taxid": [ "2959716" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenzhen" ], "sample_host_location_id": [], "data_size": "0.924 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3397356", "Number of Sequences": "6", "Longest Sequences (bp)": "1448022", "N50 (bp)": "1219768", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.5", "Number of CDSs": "3220", "Average Protein Length": "322.4", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 77.6627, "matched_fragments": 240, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.6065, "matched_fragments": 285, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaustia mangrovi", "strain": "strain=R1DC25", "accession": "GCA_015482775.1", "taxid": 2593653, "species_taxid": 2593653, "relation_to_type": "type", "validated": true, "ani": 77.5051, "matched_fragments": 291, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 77.4906, "matched_fragments": 217, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.4028, "matched_fragments": 304, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 77.3038, "matched_fragments": 258, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 77.2894, "matched_fragments": 252, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propylenella binzhouense", "strain": "strain=L72", "accession": "GCA_009866965.1", "taxid": 2555902, "species_taxid": 2555902, "relation_to_type": "type", "validated": true, "ani": 77.2447, "matched_fragments": 226, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas soli", "strain": "strain=BN140002", "accession": "GCA_008386575.1", "taxid": 1638099, "species_taxid": 1638099, "relation_to_type": "type", "validated": true, "ani": 77.0753, "matched_fragments": 234, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 77.0503, "matched_fragments": 238, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, "relation_to_type": "type", "validated": true, "ani": 77.043, "matched_fragments": 205, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 77.0371, "matched_fragments": 268, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nodulans", "strain": "strain=ORS 2060", "accession": "GCA_000022085.1", "taxid": 114616, "species_taxid": 114616, "relation_to_type": "type", "validated": true, "ani": 76.9847, "matched_fragments": 247, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 76.972, "matched_fragments": 258, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 76.9653, "matched_fragments": 268, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 76.9527, "matched_fragments": 243, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=JCM 2831", "accession": "GCA_000019725.1", "taxid": 31998, "species_taxid": 31998, "relation_to_type": "type", "validated": true, "ani": 76.9053, "matched_fragments": 220, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas pacifica", "strain": "strain=CGMCC 1.11030", "accession": "GCA_900113695.1", "taxid": 1114924, "species_taxid": 1114924, "relation_to_type": "type", "validated": true, "ani": 76.885, "matched_fragments": 336, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 76.8758, "matched_fragments": 255, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 76.8626, "matched_fragments": 286, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas endophytica", "strain": "strain=CGMCC 1.15367", "accession": "GCA_014642635.1", "taxid": 2027858, "species_taxid": 2027858, "relation_to_type": "type", "validated": true, "ani": 76.8267, "matched_fragments": 225, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 76.7879, "matched_fragments": 278, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=NBRC 15690", "accession": "GCA_007991055.1", "taxid": 31998, "species_taxid": 31998, "relation_to_type": "type", "validated": true, "ani": 76.7817, "matched_fragments": 219, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum moscoviense", "strain": "strain=BB-1", "accession": "GCA_001650635.1", "taxid": 1437059, "species_taxid": 1437059, "relation_to_type": "type", "validated": true, "ani": 76.7754, "matched_fragments": 145, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=MIMD6", "accession": "GCA_003574465.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 76.7374, "matched_fragments": 278, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 76.7172, "matched_fragments": 284, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.7072, "matched_fragments": 164, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium cerastii", "strain": "strain=DSM 23679", "accession": "GCA_022179125.1", "taxid": 932741, "species_taxid": 932741, "relation_to_type": "type", "validated": true, "ani": 76.7007, "matched_fragments": 226, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.6687, "matched_fragments": 290, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium sulfonivorans", "strain": "strain=S1", "accession": "GCA_013306565.1", "taxid": 121290, "species_taxid": 121290, "relation_to_type": "type", "validated": true, "ani": 76.5982, "matched_fragments": 91, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aquaticum", "strain": "strain=DSM 16371", "accession": "GCA_001043915.1", "taxid": 270351, "species_taxid": 270351, "relation_to_type": "type", "validated": true, "ani": 76.5913, "matched_fragments": 258, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014196925.1", "gtdb_species": "s__Chelatococcus_A caeni", "ani": 77.607, "matched_fragments": 285, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Chelatococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015482775.1", "gtdb_species": "s__Kaustia mangrovi", "ani": 77.4949, "matched_fragments": 292, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Im1;g__Kaustia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008630065.1", "gtdb_species": "s__Blastochloris sulfoviridis", "ani": 77.4765, "matched_fragments": 218, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Blastochloris", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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