{ "type": "genome", "identifier": "GCF_024160105.1", "organism": "Corynebacterium stercoris", "title": "Corynebacterium stercoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyungpook National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024160105.1", "bioproject": "PRJNA224116", "biosample": "SAMN28197344", "wgs_master": "JAMFTQ000000000.1", "refseq_category": "reference genome", "taxid": "2943490", "species_taxid": "2943490", "organism_name": "Corynebacterium stercoris", "infraspecific_name": "strain=TA-R-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/05", "asm_name": "ASM2416010v1", "asm_submitter": "Kyungpook National University", "gbrs_paired_asm": "GCA_024160105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/160/105/GCF_024160105.1_ASM2416010v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2352634", "genome_size_ungapped": "2352534", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024160105.1-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "2266", "protein_coding_gene_count": "2176", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-05", "dateModified": "2022-07-05", "datePublished": "2022-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium stercoris" ], "sample_taxid": [ "2943490" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Daegu" ], "sample_host_location_id": [], "data_size": "0.652 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2352634", "Number of Sequences": "31", "Longest Sequences (bp)": "421766", "N50 (bp)": "133040", "Gap Ratio (%)": "0.004251", "GCcontent (%)": "66.1", "Number of CDSs": "2224", "Average Protein Length": "324.4", "Coding Ratio (%)": "92.0", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 82.8335, 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"matched_fragments": 480, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 81.3872, "matched_fragments": 473, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium fournieri", "strain": "strain=Marseille-P2948", "accession": "GCA_900176865.1", "taxid": 1852390, "species_taxid": 1852390, "relation_to_type": "type", "validated": true, "ani": 81.31, "matched_fragments": 488, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium hadale", "strain": "strain=NBT06-6", "accession": "GCA_002273005.1", "taxid": 2026255, "species_taxid": 2026255, "relation_to_type": "type", "validated": true, "ani": 81.3062, "matched_fragments": 454, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 81.2168, "matched_fragments": 468, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium imitans", "strain": "strain=DSM 44264", "accession": "GCA_000739455.1", "taxid": 156978, "species_taxid": 156978, "relation_to_type": "type", "validated": true, "ani": 80.9557, "matched_fragments": 465, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium imitans", "strain": "strain=NCTC13015", "accession": "GCA_900187215.1", "taxid": 156978, "species_taxid": 156978, "relation_to_type": "type", "validated": true, "ani": 80.9479, "matched_fragments": 473, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ureicelerivorans", "strain": "strain=IMMIB RIV-2301", "accession": "GCA_000747315.1", "taxid": 401472, "species_taxid": 401472, "relation_to_type": "type", "validated": true, "ani": 80.9413, "matched_fragments": 433, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium appendicis", "strain": "strain=DSM 44531", "accession": "GCA_900156665.1", "taxid": 163202, "species_taxid": 163202, "relation_to_type": "type", "validated": true, "ani": 79.9081, "matched_fragments": 386, "total_fragments": 768, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 8.33, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_900078305.2", "gtdb_species": "s__Corynebacterium bouchesdurhonense", "ani": 82.8178, "matched_fragments": 536, "total_fragments": 768, "gtdb_taxonomy": 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