{ "type": "genome", "identifier": "GCF_024169515.1", "organism": "Erwinia aphidicola", "title": "Erwinia aphidicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024169515.1", "bioproject": "PRJNA224116", "biosample": "SAMN18261510", "wgs_master": "JAMKCQ000000000.1", "refseq_category": "na", "taxid": "68334", "species_taxid": "68334", "organism_name": "Erwinia aphidicola", "infraspecific_name": "strain=X001", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/06", "asm_name": "ASM2416951v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_024169515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/169/515/GCF_024169515.1_ASM2416951v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4929485", "genome_size_ungapped": "4929485", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024169515.1-RS_2024_07_15", "annotation_date": "2024-07-15", "total_gene_count": "4601", "protein_coding_gene_count": "4434", "non_coding_gene_count": "115", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-06", "dateModified": "2022-07-06", "datePublished": "2022-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Erwinia aphidicola" ], "sample_taxid": [ "68334" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Colorado Springs, CO" ], "sample_host_location_id": [], "data_size": "1.383 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4929485", "Number of Sequences": "3", "Longest Sequences (bp)": "4737076", "N50 (bp)": "4737076", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.6", "Number of CDSs": "4497", "Average Protein Length": "318.4", "Coding Ratio (%)": "87.1", "Number of rRNAs": "22", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1642, "total_fragments": 1642, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=JCM 21238", "accession": "GCA_014773485.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 98.1198, "matched_fragments": 1444, "total_fragments": 1642, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Erwinia persicina", "strain": "strain=NBRC 102418", "accession": "GCA_001571305.1", "taxid": 55211, "species_taxid": 55211, "relation_to_type": "type", "validated": true, "ani": 83.3179, "matched_fragments": 1088, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia pyrifoliae", "strain": "strain=DSM 12163", "accession": "GCA_000026985.1", "taxid": 79967, "species_taxid": 79967, "relation_to_type": "type", "validated": true, "ani": 82.1819, "matched_fragments": 833, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia tasmaniensis", "strain": "strain=Et1/99", "accession": "GCA_000026185.1", "taxid": 338565, "species_taxid": 338565, "relation_to_type": "type", "validated": true, "ani": 82.0496, "matched_fragments": 866, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia piriflorinigrans", "strain": "strain=CFBP 5888", "accession": "GCA_001050515.1", "taxid": 665097, "species_taxid": 665097, "relation_to_type": "type", "validated": true, "ani": 81.939, "matched_fragments": 795, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia amylovora", "strain": "strain=NBRC 12687", "accession": "GCA_000696075.1", "taxid": 552, "species_taxid": 552, "relation_to_type": "type", "validated": true, "ani": 81.7575, "matched_fragments": 816, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia phyllosphaerae", "strain": "strain=CMYE1", "accession": "GCA_019132875.1", "taxid": 2853256, "species_taxid": 2853256, "relation_to_type": "type", "validated": true, "ani": 80.5604, "matched_fragments": 791, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea deleyi", "strain": "strain=LMG24200", "accession": "GCA_022647325.1", "taxid": 470932, "species_taxid": 470932, "relation_to_type": "type", "validated": true, "ani": 79.9616, "matched_fragments": 794, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 79.5051, "matched_fragments": 687, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea stewartii subsp. indologenes", "strain": "strain=LMG 2632", "accession": "GCA_000757405.2", "taxid": 66270, "species_taxid": 66269, 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