{
    "type": "genome",
    "identifier": "GCF_024171465.1",
    "organism": "Duganella violaceipulchra",
    "title": "Duganella violaceipulchra",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024171465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN25026404",
        "wgs_master": "JALJZU000000000.1",
        "refseq_category": "na",
        "taxid": "2849652",
        "species_taxid": "2849652",
        "organism_name": "Duganella violaceipulchra",
        "infraspecific_name": "strain=HSC-15S17",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/06",
        "asm_name": "ASM2417146v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_024171465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/171/465/GCF_024171465.1_ASM2417146v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7444293",
        "genome_size_ungapped": "7444293",
        "gc_percent": "64.000000",
        "replicon_count": "0",
        "scaffold_count": "70",
        "contig_count": "70",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-18",
        "total_gene_count": "6613",
        "protein_coding_gene_count": "6469",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-06",
    "dateModified": "2022-07-06",
    "datePublished": "2022-07-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Duganella violaceipulchra"
        ],
        "sample_taxid": [
            "2849652"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.045 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7444293",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "1028913",
        "N50 (bp)": "514245",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.1",
        "Number of CDSs": "6517",
        "Average Protein Length": "344.8",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rugamonas rivuli",
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                "accession": "GCA_009380165.1",
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                "species_taxid": 2743358,
                "relation_to_type": "type",
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                "matched_fragments": 1850,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_009380215.1",
                "taxid": 2743357,
                "species_taxid": 2743357,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.708,
                "matched_fragments": 1833,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "status": "below_threshold"
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            {
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                "accession": "GCA_009674565.1",
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                "species_taxid": 2666082,
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                "matched_fragments": 1486,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella alba",
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                "species_taxid": 2666081,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Duganella radicis",
                "strain": "strain=KCTC 22382",
                "accession": "GCA_009720825.1",
                "taxid": 551988,
                "species_taxid": 551988,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella dendranthematis",
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                "accession": "GCA_012849375.1",
                "taxid": 2728021,
                "species_taxid": 2728021,
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                "matched_fragments": 1489,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rugamonas brunnea",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rugamonas apoptosis",
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                "accession": "GCA_014042355.1",
                "taxid": 2758570,
                "species_taxid": 2758570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8627,
                "matched_fragments": 1279,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella phyllosphaerae",
                "strain": "strain=T54",
                "accession": "GCA_001758785.1",
                "taxid": 762836,
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                "relation_to_type": "type",
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                "ani": 83.7065,
                "matched_fragments": 1257,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella aquatica",
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                "accession": "GCA_009857595.1",
                "taxid": 2660641,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Janthinobacterium tructae",
                "strain": "strain=SNU WT3",
                "accession": "GCA_006517255.1",
                "taxid": 2590869,
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                "relation_to_type": "type",
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                "ani": 80.745,
                "matched_fragments": 1085,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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                "accession": "GCA_000381565.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "violaceipulchra"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}