{ "type": "genome", "identifier": "GCF_024171735.1", "organism": "Prauserella alba", "title": "Prauserella alba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024171735.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660435", "wgs_master": "JAMTCH000000000.1", "refseq_category": "reference genome", "taxid": "176898", "species_taxid": "176898", "organism_name": "Prauserella alba", "infraspecific_name": "strain=DSM 44590", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/06", "asm_name": "ASM2417173v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_024171735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/171/735/GCF_024171735.1_ASM2417173v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5615509", "genome_size_ungapped": "5615489", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024171735.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5175", "protein_coding_gene_count": "5062", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-06", "dateModified": "2022-07-06", "datePublished": "2022-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Prauserella alba" ], "sample_taxid": [ "176898" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.511 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5615509", "Number of Sequences": "11", "Longest Sequences (bp)": "1966363", "N50 (bp)": "1460839", "Gap Ratio (%)": "0.000356", "GCcontent (%)": "70.1", "Number of CDSs": "5188", "Average Protein Length": "321.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "5", "Number of tRNAs": "60", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prauserella isguenensis", "strain": "strain=CECT 8577", "accession": "GCA_014191605.1", "taxid": 1470180, "species_taxid": 1470180, "relation_to_type": "type", "validated": true, "ani": 88.6011, "matched_fragments": 1414, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella aidingensis", "strain": "strain=DSM 45266", "accession": "GCA_024171865.1", "taxid": 387890, "species_taxid": 387890, "relation_to_type": "type", "validated": true, "ani": 88.5875, "matched_fragments": 1443, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella rugosa", "strain": "strain=NRRL B-2295", "accession": "GCA_000719975.1", "taxid": 43354, "species_taxid": 43354, "relation_to_type": "type", "validated": true, "ani": 83.8374, "matched_fragments": 1292, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella rugosa", "strain": "strain=DSM 43194", "accession": "GCA_007829565.1", "taxid": 43354, "species_taxid": 43354, "relation_to_type": "type", "validated": true, "ani": 83.7993, "matched_fragments": 1297, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 80.1415, "matched_fragments": 967, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 79.5744, "matched_fragments": 816, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis viridis", "strain": "strain=DSM 45668", "accession": "GCA_011758765.1", "taxid": 185678, "species_taxid": 185678, "relation_to_type": "type", "validated": true, "ani": 79.2859, "matched_fragments": 766, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora piscinae", "strain": "strain=KCTC 19743", "accession": "GCA_005862235.1", "taxid": 687388, "species_taxid": 687388, "relation_to_type": "type", "validated": true, "ani": 79.2761, "matched_fragments": 702, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora iraqiensis subsp. paurometabolica", "strain": "strain=YIM 90007", "accession": "GCA_000231035.3", "taxid": 208085, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 79.2609, "matched_fragments": 676, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora cyanea", "strain": "strain=NA-134", "accession": "GCA_000244975.1", "taxid": 40989, "species_taxid": 40989, "relation_to_type": "type", "validated": true, "ani": 79.1752, "matched_fragments": 735, "total_fragments": 1866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acididurans", "strain": "strain=K13G38", 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