{
    "type": "genome",
    "identifier": "GCF_024171765.1",
    "organism": "Williamsia deligens",
    "title": "Williamsia deligens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024171765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05661029",
        "wgs_master": "JAMTCI000000000.1",
        "refseq_category": "reference genome",
        "taxid": "321325",
        "species_taxid": "321325",
        "organism_name": "Williamsia deligens",
        "infraspecific_name": "strain=DSM 44902",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/06",
        "asm_name": "ASM2417176v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_024171765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/171/765/GCF_024171765.1_ASM2417176v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4410574",
        "genome_size_ungapped": "4408794",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024171765.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "4129",
        "protein_coding_gene_count": "4039",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-06",
    "dateModified": "2022-07-06",
    "datePublished": "2022-07-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Williamsia deligens"
        ],
        "sample_taxid": [
            "321325"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.177 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4410574",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "3084768",
        "N50 (bp)": "3084768",
        "Gap Ratio (%)": "0.040358",
        "GCcontent (%)": "70.2",
        "Number of CDSs": "4104",
        "Average Protein Length": "332.2",
        "Coding Ratio (%)": "92.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Williamsia deligens",
                "strain": "strain=DSM 44902",
                "accession": "GCA_024171765.1",
                "taxid": 321325,
                "species_taxid": 321325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1464,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Williamsia serinedens",
                "strain": "strain=DSM 45037",
                "accession": "GCA_024171725.1",
                "taxid": 391736,
                "species_taxid": 391736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2935,
                "matched_fragments": 1227,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Williamsia herbipolensis",
                "strain": "strain=ARP1",
                "accession": "GCA_000964005.1",
                "taxid": 1603258,
                "species_taxid": 1603258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2645,
                "matched_fragments": 922,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Williamsia maris",
                "strain": "strain=DSM 44693",
                "accession": "GCA_024171815.1",
                "taxid": 72806,
                "species_taxid": 72806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7524,
                "matched_fragments": 884,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Williamsia phyllosphaerae",
                "strain": "strain=CCM 7855",
                "accession": "GCA_014635305.1",
                "taxid": 885042,
                "species_taxid": 885042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4628,
                "matched_fragments": 882,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia paraffinivorans",
                "strain": "strain=NBRC 108238",
                "accession": "GCA_000344155.1",
                "taxid": 175628,
                "species_taxid": 175628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4816,
                "matched_fragments": 576,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia namibiensis",
                "strain": "strain=NBRC 108229",
                "accession": "GCA_000298235.1",
                "taxid": 168480,
                "species_taxid": 168480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1672,
                "matched_fragments": 568,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia pseudamarae",
                "strain": "strain=CON9",
                "accession": "GCA_025273675.1",
                "taxid": 2831662,
                "species_taxid": 2831662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2578,
                "matched_fragments": 488,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella defluvii",
                "strain": "strain=Ca11",
                "accession": "GCA_000738775.1",
                "taxid": 1323361,
                "species_taxid": 1323361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2231,
                "matched_fragments": 448,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dietzia lutea",
                "strain": "strain=YIM 80766",
                "accession": "GCA_003096075.1",
                "taxid": 546160,
                "species_taxid": 546160,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8503,
                "matched_fragments": 331,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000964005.1",
                "gtdb_species": "s__Williamsia_A herbipolensis",
                "ani": 81.2696,
                "matched_fragments": 922,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.03",
                "min_intra_species_ani": "95.03",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014635305.1",
                "gtdb_species": "s__Williamsia_A phyllosphaerae",
                "ani": 80.491,
                "matched_fragments": 877,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016462415.1",
                "gtdb_species": "s__Williamsia_A sp016462415",
                "ani": 80.4352,
                "matched_fragments": 813,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000344155.1",
                "gtdb_species": "s__Gordonia paraffinivorans",
                "ani": 79.4818,
                "matched_fragments": 576,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_018474015.1",
                "gtdb_species": "s__Williamsia_A sp018474015",
                "ani": 79.2236,
                "matched_fragments": 612,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000298235.1",
                "gtdb_species": "s__Gordonia namibiensis",
                "ani": 79.151,
                "matched_fragments": 571,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.13",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014041935.1",
                "gtdb_species": "s__Gordonia sp014041935",
                "ani": 79.106,
                "matched_fragments": 561,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001485495.1",
                "gtdb_species": "s__Gordonia desulfuricans",
                "ani": 79.0465,
                "matched_fragments": 550,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000327325.1",
                "gtdb_species": "s__Gordonia rubripertincta",
                "ani": 79.0008,
                "matched_fragments": 570,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000332995.1",
                "gtdb_species": "s__Gordonia amicalis",
                "ani": 78.9365,
                "matched_fragments": 559,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "97.39",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_013348785.1",
                "gtdb_species": "s__Gordonia sp013348785",
                "ani": 78.8892,
                "matched_fragments": 470,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002149015.1",
                "gtdb_species": "s__Gordonia lacunae",
                "ani": 78.8752,
                "matched_fragments": 581,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003855095.1",
                "gtdb_species": "s__Gordonia insulae",
                "ani": 78.713,
                "matched_fragments": 586,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000024785.1",
                "gtdb_species": "s__Gordonia bronchialis",
                "ani": 78.6937,
                "matched_fragments": 547,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000241345.1",
                "gtdb_species": "s__Gordonia amarae",
                "ani": 78.6133,
                "matched_fragments": 542,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000738775.1",
                "gtdb_species": "s__Rhodococcus defluvii",
                "ani": 78.2364,
                "matched_fragments": 447,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009914535.1",
                "gtdb_species": "s__Gordonia pseudoamarae",
                "ani": 78.2256,
                "matched_fragments": 477,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003051005.1",
                "gtdb_species": "s__Rhodococcus sp003051005",
                "ani": 78.0366,
                "matched_fragments": 428,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096075.1",
                "gtdb_species": "s__Dietzia lutea",
                "ani": 77.8253,
                "matched_fragments": 328,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000186325.1",
                "gtdb_species": "s__Dietzia cinnamea_A",
                "ani": 77.7192,
                "matched_fragments": 300,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.1735,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "96.10",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.228,
        "cell_length": 0.167,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.5,
        "optimum_ph": 7.0,
        "genome_size": 4410574.0,
        "gc_content": 66.675,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Williamsia",
        "deligens"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}