{ "type": "genome", "identifier": "GCF_024171785.1", "organism": "Goodfellowiella coeruleoviolacea", "title": "Goodfellowiella coeruleoviolacea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024171785.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660962", "wgs_master": "JAMTCK000000000.1", "refseq_category": "reference genome", "taxid": "334858", "species_taxid": "334858", "organism_name": "Goodfellowiella coeruleoviolacea", "infraspecific_name": "strain=DSM 43935", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/06", "asm_name": "ASM2417178v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_024171785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/171/785/GCF_024171785.1_ASM2417178v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8779662", "genome_size_ungapped": "8768262", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024171785.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "7528", "protein_coding_gene_count": "7391", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-06", "dateModified": "2022-07-06", "datePublished": "2022-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Goodfellowiella coeruleoviolacea" ], "sample_taxid": [ "334858" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.315 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8779662", "Number of Sequences": "58", "Longest Sequences (bp)": "870919", "N50 (bp)": "425295", "Gap Ratio (%)": "0.129846", "GCcontent (%)": "72.4", "Number of CDSs": "7564", "Average Protein Length": "335.4", "Coding Ratio (%)": "86.7", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "19" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharothrix coeruleofusca", "strain": "strain=JCM 3313", "accession": "GCA_014648515.1", "taxid": 33919, "species_taxid": 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"organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 78.5501, "matched_fragments": 1018, "total_fragments": 2897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 78.4966, "matched_fragments": 942, "total_fragments": 2897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora baliensis", "strain": "strain=DSM 45656", "accession": "GCA_016907695.1", "taxid": 547056, "species_taxid": 547056, "relation_to_type": "type", "validated": true, "ani": 78.387, "matched_fragments": 933, "total_fragments": 2897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora 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79.3411, "matched_fragments": 1456, "total_fragments": 2897, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014203665.1", "gtdb_species": "s__Actinosynnema tamanrassetense", "ani": 79.2594, "matched_fragments": 1127, "total_fragments": 2897, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014645795.1", "gtdb_species": "s__Longimycelium tulufanense", "ani": 79.1665, 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