{
    "type": "genome",
    "identifier": "GCF_024172065.1",
    "organism": "Agromyces terreus",
    "title": "Agromyces terreus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024172065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05877691",
        "wgs_master": "JAMZDY000000000.1",
        "refseq_category": "na",
        "taxid": "424795",
        "species_taxid": "424795",
        "organism_name": "Agromyces terreus",
        "infraspecific_name": "strain=DSM 22016",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/06",
        "asm_name": "ASM2417206v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_024172065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/172/065/GCF_024172065.1_ASM2417206v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3713220",
        "genome_size_ungapped": "3713220",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024172065.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "3306",
        "protein_coding_gene_count": "3231",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-06",
    "dateModified": "2022-07-06",
    "datePublished": "2022-07-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Agromyces terreus"
        ],
        "sample_taxid": [
            "424795"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.975 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "3713220",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3713220",
        "N50 (bp)": "3713220",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.1",
        "Number of CDSs": "3267",
        "Average Protein Length": "346.9",
        "Coding Ratio (%)": "91.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            {
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                "species_taxid": 453304,
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                "status": "below_threshold"
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            {
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            {
                "organism_name": "Agromyces salentinus",
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                "species_taxid": 269421,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Agromyces hippuratus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces lapidis",
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                "accession": "GCA_009749405.1",
                "taxid": 279574,
                "species_taxid": 279574,
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                "matched_fragments": 802,
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            },
            {
                "organism_name": "Agromyces humi",
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                "taxid": 1766800,
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                "relation_to_type": "type",
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            {
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            {
                "organism_name": "Agromyces fucosus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces agglutinans",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces cavernae",
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                "accession": "GCA_021044935.1",
                "taxid": 2898659,
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                "ani": 82.6869,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces albus",
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                "accession": "GCA_004134825.1",
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                "organism_name": "Agromyces humatus",
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                "status": "below_threshold"
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            {
                "organism_name": "Agromyces archimandritae",
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                "species_taxid": 2781962,
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                "ani": 80.8662,
                "matched_fragments": 638,
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                "status": "below_threshold"
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                "min_intra_species_ani": "N/A",
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}