{ "type": "genome", "identifier": "GCF_024172185.1", "organism": "Nonomuraea roseoviolacea subsp. carminata", "title": "Nonomuraea roseoviolacea subsp. carminata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024172185.1", "bioproject": "PRJNA224116", "biosample": "SAMN14510488", "wgs_master": "JAMZEC000000000.1", "refseq_category": "reference genome", "taxid": "160689", "species_taxid": "103837", "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "infraspecific_name": "strain=DSM 44170", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/06", "asm_name": "ASM2417218v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_024172185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/172/185/GCF_024172185.1_ASM2417218v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9752649", "genome_size_ungapped": "9752649", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024172185.1-RS_2024_03_24", "annotation_date": "2024-03-24", "total_gene_count": "9089", "protein_coding_gene_count": "8941", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-06", "dateModified": "2022-07-06", "datePublished": "2022-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea roseoviolacea subsp. carminata" ], "sample_taxid": [ "160689" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.588 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 7.52, "strain_heterogeneity": 71.43, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9752649", "Number of Sequences": "3", "Longest Sequences (bp)": "9750859", "N50 (bp)": "9750859", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.5", "Number of CDSs": "9216", "Average Protein Length": "318.7", "Coding Ratio (%)": "90.4", "Number of rRNAs": "15", "Number of tRNAs": "79", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 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"strain=DSM 43926", "accession": "GCA_005889735.1", "taxid": 103838, "species_taxid": 103838, "relation_to_type": "type", "validated": true, "ani": 82.8139, "matched_fragments": 1760, "total_fragments": 3250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea antri", "strain": "strain=NN258", "accession": "GCA_013283785.1", "taxid": 2730852, "species_taxid": 2730852, "relation_to_type": "type", "validated": true, "ani": 82.7511, "matched_fragments": 1843, "total_fragments": 3250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 81.7966, "matched_fragments": 1819, "total_fragments": 3250, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 7.52, "strain_heterogeneity": 71.43 }, "gtdb_result": [ { 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