{ "type": "genome", "identifier": "GCF_024195295.1", "organism": "Gilvimarinus xylanilyticus", "title": "Gilvimarinus xylanilyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024195295.1", "bioproject": "PRJNA224116", "biosample": "SAMN28415523", "wgs_master": "JAMFTH000000000.1", "refseq_category": "reference genome", "taxid": "2944139", "species_taxid": "2944139", "organism_name": "Gilvimarinus xylanilyticus", "infraspecific_name": "strain=HB14", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/08", "asm_name": "ASM2419529v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_024195295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/195/295/GCF_024195295.1_ASM2419529v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3930865", "genome_size_ungapped": "3929955", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-09", "total_gene_count": "3426", "protein_coding_gene_count": "3368", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-08", "dateModified": "2022-07-08", "datePublished": "2022-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Gilvimarinus xylanilyticus" ], "sample_taxid": [ "2944139" ], "sample_host_organism": [ "Caulerpa lentillifera" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan Province" ], "sample_host_location_id": [], "data_size": "1.118 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3930865", "Number of Sequences": "13", "Longest Sequences (bp)": "2053438", "N50 (bp)": "2053438", "Gap Ratio (%)": "0.023150", "GCcontent (%)": "54.0", "Number of CDSs": "3444", "Average Protein Length": "338.3", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gilvimarinus chinensis", "strain": "strain=DSM 19667", "accession": "GCA_000377745.1", "taxid": 396005, "species_taxid": 396005, "relation_to_type": "type", "validated": true, "ani": 81.6297, "matched_fragments": 586, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilvimarinus polysaccharolyticus", "strain": "strain=YN3", "accession": "GCA_001187555.1", "taxid": 863921, "species_taxid": 863921, "relation_to_type": "type", "validated": true, "ani": 77.7665, "matched_fragments": 204, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium koreense", "strain": "strain=DSM 16974", "accession": "GCA_003762925.1", "taxid": 306545, "species_taxid": 306545, "relation_to_type": "type", "validated": true, "ani": 77.4253, "matched_fragments": 180, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium agarilyticum", "strain": "strain=DSM 16975", "accession": "GCA_000423345.1", "taxid": 306546, "species_taxid": 306546, "relation_to_type": "type", "validated": true, "ani": 77.169, "matched_fragments": 187, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium alkaliphilum", "strain": "strain=SW121", "accession": "GCA_003259155.1", "taxid": 2202654, "species_taxid": 2202654, "relation_to_type": "type", "validated": true, "ani": 77.1399, "matched_fragments": 168, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomaricurvus alcaniphilus", "strain": "strain=MEBiC06469", "accession": "GCA_011440395.1", "taxid": 1166482, "species_taxid": 1166482, "relation_to_type": "type", "validated": true, "ani": 76.6937, "matched_fragments": 103, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellvibrio polysaccharolyticus", "strain": "strain=Ka43", "accession": "GCA_015182315.1", "taxid": 2082724, "species_taxid": 2082724, "relation_to_type": "type", "validated": true, "ani": 76.6864, "matched_fragments": 132, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariicella albida", "strain": "strain=HHU G3-2", "accession": "GCA_018863235.1", "taxid": 2842452, "species_taxid": 2842452, "relation_to_type": "type", "validated": true, "ani": 76.681, "matched_fragments": 94, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_011683895.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.6685, "matched_fragments": 72, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_014207695.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.4661, "matched_fragments": 71, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=LMG 25246", "accession": "GCA_011602085.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.4623, "matched_fragments": 72, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer hainanensis", "strain": "strain=NBU-8HK146", "accession": "GCA_014904735.1", "taxid": 2735675, "species_taxid": 2735675, "relation_to_type": "type", "validated": true, "ani": 76.3757, "matched_fragments": 81, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agaribacterium haliotis", "strain": "strain=feces2", "accession": "GCA_002312815.1", "taxid": 2013869, "species_taxid": 2013869, "relation_to_type": "type", "validated": true, "ani": 76.3636, "matched_fragments": 66, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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