{
    "type": "genome",
    "identifier": "GCF_024198215.1",
    "organism": "Myxococcus qinghaiensis",
    "title": "Myxococcus qinghaiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Guangdong Institute of Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024198215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN24451124",
        "wgs_master": "JAKCFA000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2906758",
        "species_taxid": "2906758",
        "organism_name": "Myxococcus qinghaiensis",
        "infraspecific_name": "strain=QH3KD-4-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/08",
        "asm_name": "ASM2419821v1",
        "asm_submitter": "Guangdong Institute of Microbiology",
        "gbrs_paired_asm": "GCA_024198215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/198/215/GCF_024198215.1_ASM2419821v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "11517428",
        "genome_size_ungapped": "11517428",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "88",
        "contig_count": "88",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024198215.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "9210",
        "protein_coding_gene_count": "9044",
        "non_coding_gene_count": "85",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-08",
    "dateModified": "2022-07-08",
    "datePublished": "2022-07-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Myxococcus qinghaiensis"
        ],
        "sample_taxid": [
            "2906758"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangdong Province"
        ],
        "sample_host_location_id": [],
        "data_size": "3.119 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "11517428",
        "Number of Sequences": "88",
        "Longest Sequences (bp)": "677948",
        "N50 (bp)": "323385",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.1",
        "Number of CDSs": "9285",
        "Average Protein Length": "370.6",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "91",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Myxococcus eversor",
                "strain": "strain=AB053B",
                "accession": "GCA_010894455.1",
                "taxid": 2709661,
                "species_taxid": 2709661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.7534,
                "matched_fragments": 3289,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis",
                "strain": "strain=AM401",
                "accession": "GCA_006636215.1",
                "taxid": 2590453,
                "species_taxid": 2590453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.7333,
                "matched_fragments": 3039,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus fulvus",
                "strain": "strain=NBRC 100333",
                "accession": "GCA_007991095.1",
                "taxid": 33,
                "species_taxid": 33,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2482,
                "matched_fragments": 2885,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus fulvus",
                "strain": "strain=DSM 16525",
                "accession": "GCA_900111765.1",
                "taxid": 33,
                "species_taxid": 33,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2422,
                "matched_fragments": 2922,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus stipitatus",
                "strain": "strain=DSM 14675",
                "accession": "GCA_000331735.1",
                "taxid": 83455,
                "species_taxid": 83455,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 86.2961,
                "matched_fragments": 2614,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pyxidicoccus caerfyrddinensis",
                "strain": "strain=CA032A",
                "accession": "GCA_010894405.1",
                "taxid": 2709663,
                "species_taxid": 2709663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.047,
                "matched_fragments": 2502,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pyxidicoccus trucidator",
                "strain": "strain=CA060A",
                "accession": "GCA_010894435.1",
                "taxid": 2709662,
                "species_taxid": 2709662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0247,
                "matched_fragments": 2532,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pyxidicoccus fallax",
                "strain": "strain=DSM 14698",
                "accession": "GCA_012933655.1",
                "taxid": 394095,
                "species_taxid": 394095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.837,
                "matched_fragments": 2294,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus soli",
                "strain": "strain=ZKHCc1 1396",
                "accession": "GCA_014930455.1",
                "taxid": 2710757,
                "species_taxid": 2710757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1074,
                "matched_fragments": 1921,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus silvisoli",
                "strain": "strain=c25j21",
                "accession": "GCA_009909145.1",
                "taxid": 2697031,
                "species_taxid": 2697031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9915,
                "matched_fragments": 1881,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ancylobacter rudongensis",
                "strain": "strain=CGMCC 1.1761",
                "accession": "GCA_900100155.1",
                "taxid": 177413,
                "species_taxid": 177413,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.016,
                "matched_fragments": 168,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes roseus",
                "strain": "strain=DSM 5909",
                "accession": "GCA_003258865.1",
                "taxid": 29409,
                "species_taxid": 29409,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0126,
                "matched_fragments": 204,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcanivorax profundimaris",
                "strain": "strain=ST75FaO-1",
                "accession": "GCA_015265435.1",
                "taxid": 2735259,
                "species_taxid": 2735259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.999,
                "matched_fragments": 150,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter pulmonis",
                "strain": "strain=LMG 26696",
                "accession": "GCA_902859765.1",
                "taxid": 1389932,
                "species_taxid": 1389932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9307,
                "matched_fragments": 194,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ancylobacter aquaticus",
                "strain": "strain=DSM 101",
                "accession": "GCA_004339465.1",
                "taxid": 100,
                "species_taxid": 100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.889,
                "matched_fragments": 141,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dactylosporangium matsuzakiense",
                "strain": "strain=NRRL B-16293",
                "accession": "GCA_025264725.1",
                "taxid": 53360,
                "species_taxid": 53360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7622,
                "matched_fragments": 382,
                "total_fragments": 3793,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010894455.1",
                "gtdb_species": "s__Myxococcus eversor",
                "ani": 94.7473,
                "matched_fragments": 3290,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013336725.1",
                "gtdb_species": "s__Myxococcus sp013336725",
                "ani": 91.8546,
                "matched_fragments": 3210,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900111765.1",
                "gtdb_species": "s__Myxococcus fulvus",
                "ani": 87.2674,
                "matched_fragments": 2916,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "95.70",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000331735.1",
                "gtdb_species": "s__Myxococcus stipitatus",
                "ani": 86.3118,
                "matched_fragments": 2609,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017301635.1",
                "gtdb_species": "s__Myxococcus sp017301635",
                "ani": 86.2766,
                "matched_fragments": 2600,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010894435.1",
                "gtdb_species": "s__Myxococcus trucidator",
                "ani": 84.0326,
                "matched_fragments": 2529,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010894405.1",
                "gtdb_species": "s__Myxococcus caerfyrddinensis",
                "ani": 84.0271,
                "matched_fragments": 2509,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017301735.1",
                "gtdb_species": "s__Myxococcus sp017301735",
                "ani": 83.8053,
                "matched_fragments": 2483,
                "total_fragments": 3793,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.172,
        "cell_length": 0.602,
        "doubling_h": 0.602,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.944,
        "optimum_ph": null,
        "genome_size": 9513623.727,
        "gc_content": 69.469,
        "coding_genes": 7417.316,
        "rRNA16S_genes": 3.6,
        "tRNA_genes": 69.533,
        "gram_stain": 0.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Myxococcus",
        "qinghaiensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}