{ "type": "genome", "identifier": "GCF_024198235.1", "organism": "Myxococcus dinghuensis", "title": "Myxococcus dinghuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024198235.1", "bioproject": "PRJNA224116", "biosample": "SAMN24450931", "wgs_master": "JAKCFB000000000.1", "refseq_category": "reference genome", "taxid": "2906761", "species_taxid": "2906761", "organism_name": "Myxococcus dinghuensis", "infraspecific_name": "strain=K15C18031901", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/08", "asm_name": "ASM2419823v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_024198235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/198/235/GCF_024198235.1_ASM2419823v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10408129", "genome_size_ungapped": "10408129", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "124", "contig_count": "124", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024198235.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "8569", "protein_coding_gene_count": "8366", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-08", "dateModified": "2022-07-08", "datePublished": "2022-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcus dinghuensis" ], "sample_taxid": [ "2906761" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong Province" ], "sample_host_location_id": [], "data_size": "2.797 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10408129", "Number of Sequences": "124", "Longest Sequences (bp)": "702187", "N50 (bp)": "207354", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "8529", "Average Protein Length": "363.1", "Coding Ratio (%)": "89.3", "Number of rRNAs": "2", "Number of tRNAs": "99", "Number of CRISPRs": "12" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 16525", "accession": "GCA_900111765.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 85.525, "matched_fragments": 2465, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=NBRC 100333", "accession": "GCA_007991095.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 85.4913, "matched_fragments": 2466, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis", "strain": "strain=AM401", "accession": "GCA_006636215.1", "taxid": 2590453, "species_taxid": 2590453, "relation_to_type": "type", "validated": true, "ani": 85.1994, "matched_fragments": 2429, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus eversor", "strain": "strain=AB053B", "accession": "GCA_010894455.1", "taxid": 2709661, "species_taxid": 2709661, "relation_to_type": "type", "validated": true, "ani": 85.1488, "matched_fragments": 2535, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus stipitatus", "strain": "strain=DSM 14675", "accession": "GCA_000331735.1", "taxid": 83455, "species_taxid": 83455, "relation_to_type": "neotype", "validated": true, "ani": 84.6537, "matched_fragments": 2300, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 83.9667, "matched_fragments": 2287, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus fallax", "strain": "strain=DSM 14698", "accession": "GCA_012933655.1", "taxid": 394095, "species_taxid": 394095, "relation_to_type": "type", "validated": true, "ani": 83.9383, "matched_fragments": 2070, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 83.8892, "matched_fragments": 2228, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus virescens", "strain": "strain=DSM 2260", "accession": "GCA_900101905.1", "taxid": 83456, "species_taxid": 83456, "relation_to_type": "type", "validated": true, "ani": 83.5751, "matched_fragments": 1953, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 82.4893, "matched_fragments": 1822, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 82.429, "matched_fragments": 1781, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_900101365.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 75.3481, "matched_fragments": 141, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_001399755.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 75.3309, "matched_fragments": 138, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix espanaensis", "strain": "strain=type strain: DSM 44229", "accession": "GCA_000328705.1", "taxid": 103731, "species_taxid": 103731, "relation_to_type": "type", "validated": true, "ani": 74.9678, "matched_fragments": 418, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 74.9394, "matched_fragments": 464, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus indalonis", "strain": "strain=T90", "accession": "GCA_009906395.1", "taxid": 2696566, "species_taxid": 2696566, "relation_to_type": "type", "validated": true, "ani": 74.8961, "matched_fragments": 312, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix australiensis", "strain": "strain=DSM 43800", "accession": "GCA_003634935.1", "taxid": 2072, "species_taxid": 2072, "relation_to_type": "type", "validated": true, "ani": 74.8618, "matched_fragments": 475, "total_fragments": 3411, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900111765.1", "gtdb_species": "s__Myxococcus fulvus", "ani": 85.5022, "matched_fragments": 2469, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "95.70", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013336725.1", "gtdb_species": "s__Myxococcus sp013336725", "ani": 85.2184, "matched_fragments": 2569, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_010894455.1", "gtdb_species": "s__Myxococcus eversor", "ani": 85.1322, "matched_fragments": 2539, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000331735.1", "gtdb_species": "s__Myxococcus stipitatus", "ani": 84.6548, "matched_fragments": 2299, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017301635.1", "gtdb_species": "s__Myxococcus sp017301635", "ani": 84.5534, "matched_fragments": 2300, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002305895.1", "gtdb_species": "s__Myxococcus macrosporus", "ani": 84.0565, "matched_fragments": 1998, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012933655.1", "gtdb_species": "s__Myxococcus fallax", "ani": 83.9945, "matched_fragments": 2058, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010894405.1", "gtdb_species": "s__Myxococcus caerfyrddinensis", "ani": 83.9801, "matched_fragments": 2283, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010894435.1", "gtdb_species": "s__Myxococcus trucidator", "ani": 83.8885, "matched_fragments": 2229, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017301735.1", "gtdb_species": "s__Myxococcus sp017301735", "ani": 83.8669, "matched_fragments": 2262, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014656495.1", "gtdb_species": "s__Myxococcus sp014656495", "ani": 83.5822, "matched_fragments": 1960, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010998615.1", "gtdb_species": "s__Myxococcus sp010998615", "ani": 83.3969, "matched_fragments": 1903, "total_fragments": 3411, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 96.6778, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.172, "cell_length": 0.602, "doubling_h": 0.602, "growth_tmp": 28.0, "optimum_tmp": 27.944, "optimum_ph": null, "genome_size": 9513623.727, "gc_content": 69.469, "coding_genes": 7417.316, "rRNA16S_genes": 3.6, "tRNA_genes": 69.533, "gram_stain": 0.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Myxococcus", "dinghuensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }