{ "type": "genome", "identifier": "GCF_024220585.1", "organism": "Dyadobacter diqingensis", "title": "Dyadobacter diqingensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024220585.1", "bioproject": "PRJNA224116", "biosample": "SAMN27915697", "wgs_master": "JAMXKF000000000.1", "refseq_category": "reference genome", "taxid": "2938121", "species_taxid": "2938121", "organism_name": "Dyadobacter diqingensis", "infraspecific_name": "strain=YIM B04101", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/12", "asm_name": "ASM2422058v1", "asm_submitter": "Yunnan university", "gbrs_paired_asm": "GCA_024220585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/220/585/GCF_024220585.1_ASM2422058v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7264748", "genome_size_ungapped": "7264736", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024220585.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5885", "protein_coding_gene_count": "5819", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-12", "dateModified": "2022-07-12", "datePublished": "2022-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter diqingensis" ], "sample_taxid": [ "2938121" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.062 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7264748", "Number of Sequences": "27", "Longest Sequences (bp)": "1455477", "N50 (bp)": "761141", "Gap Ratio (%)": "0.000344", "GCcontent (%)": "43.5", "Number of CDSs": "5796", "Average Protein Length": "364.2", "Coding Ratio (%)": "87.2", "Number of rRNAs": "2", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter koreensis", "strain": "strain=DSM 19938", "accession": "GCA_900108855.1", "taxid": 408657, "species_taxid": 408657, "relation_to_type": "type", "validated": true, "ani": 80.9798, "matched_fragments": 992, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter frigoris", "strain": "strain=AR-3-8", "accession": "GCA_005280585.1", "taxid": 2576211, "species_taxid": 2576211, "relation_to_type": "type", "validated": true, "ani": 80.5315, "matched_fragments": 933, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter subterraneus", "strain": "strain=UP-52", "accession": "GCA_015221875.1", "taxid": 2773304, "species_taxid": 2773304, "relation_to_type": "type", "validated": true, "ani": 80.4493, "matched_fragments": 909, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 77.7156, "matched_fragments": 428, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter luteus", "strain": "strain=RS19", "accession": "GCA_003383615.1", "taxid": 2259619, "species_taxid": 2259619, "relation_to_type": "type", "validated": true, "ani": 77.5547, "matched_fragments": 333, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, "relation_to_type": "type", "validated": true, "ani": 77.4046, "matched_fragments": 327, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, "relation_to_type": "type", "validated": true, "ani": 77.3093, "matched_fragments": 327, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 2572203, "relation_to_type": "type", "validated": true, "ani": 77.1887, "matched_fragments": 351, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter soli", "strain": "strain=DSM 25329", "accession": "GCA_900101885.1", "taxid": 659014, "species_taxid": 659014, "relation_to_type": "type", "validated": true, "ani": 77.0658, "matched_fragments": 268, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter flavalbus", "strain": "strain=NS28", "accession": "GCA_006149045.1", "taxid": 2579942, "species_taxid": 2579942, "relation_to_type": "type", "validated": true, "ani": 76.9807, "matched_fragments": 348, "total_fragments": 2408, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900108855.1", "gtdb_species": "s__Dyadobacter koreensis", "ani": 80.9798, "matched_fragments": 992, "total_fragments": 2408, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005280585.1", "gtdb_species": "s__Dyadobacter frigoris", "ani": 80.5311, "matched_fragments": 933, "total_fragments": 2408, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015221875.1", "gtdb_species": "s__Dyadobacter sp015221875", "ani": 80.4422, "matched_fragments": 910, "total_fragments": 2408, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009801115.1", "gtdb_species": "s__Dyadobacter sp009801115", "ani": 80.127, "matched_fragments": 848, "total_fragments": 2408, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349265.1", "gtdb_species": "s__Dyadobacter psychrotolerans", "ani": 77.7283, "matched_fragments": 426, "total_fragments": 2408, 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"coding_genes": 5709.667, "rRNA16S_genes": 4.0, "tRNA_genes": 38.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dyadobacter", "diqingensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }