{ "type": "genome", "identifier": "GCF_024296925.1", "organism": "Pseudomonas nunensis", "title": "Pseudomonas nunensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aarhus University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024296925.1", "bioproject": "PRJNA224116", "biosample": "SAMN29447703", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2961896", "species_taxid": "2961896", "organism_name": "Pseudomonas nunensis", "infraspecific_name": "strain=In5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/17", "asm_name": "ASM2429692v1", "asm_submitter": "Aarhus University", "gbrs_paired_asm": "GCA_024296925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/296/925/GCF_024296925.1_ASM2429692v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7328926", "genome_size_ungapped": "7328926", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024296925.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6518", "protein_coding_gene_count": "6319", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-17", "dateModified": "2022-07-17", "datePublished": "2022-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas nunensis" ], "sample_taxid": [ "2961896" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Greenland: Inneruulalik" ], "sample_host_location_id": [], "data_size": "2.044 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7328926", "Number of Sequences": "1", "Longest Sequences (bp)": "7328926", "N50 (bp)": "7328926", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "6496", "Average Protein Length": "330.8", "Coding Ratio (%)": "88.0", "Number of rRNAs": "19", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas mandelii", "strain": "strain=DSM 17967", "accession": "GCA_007858265.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0808, "matched_fragments": 1693, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=LMG 21607", "accession": "GCA_900106065.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0808, "matched_fragments": 1728, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mandelii", "strain": "strain=NBRC 103147", "accession": "GCA_002091695.1", "taxid": 75612, "species_taxid": 75612, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0795, "matched_fragments": 1667, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas farris", "strain": "strain=SWRI79", "accession": "GCA_019145235.1", "taxid": 2841207, "species_taxid": 2841207, "relation_to_type": "type", "validated": true, "ani": 87.9529, "matched_fragments": 1607, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=DSM 16768", "accession": "GCA_001042905.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 87.8891, "matched_fragments": 1588, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lini", "strain": "strain=CCUG 51522", "accession": "GCA_008801525.1", "taxid": 163011, "species_taxid": 163011, "relation_to_type": "type", "validated": true, "ani": 87.8863, "matched_fragments": 1591, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfatiphila", "strain": "strain=AP3_16", "accession": "GCA_002934665.1", "taxid": 2011015, "species_taxid": 2011015, "relation_to_type": "type", "validated": true, "ani": 86.7275, "matched_fragments": 1538, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoriens", "strain": "strain=SWRI123", "accession": "GCA_019139795.1", "taxid": 2842350, "species_taxid": 2842350, "relation_to_type": "type", "validated": true, "ani": 86.72, "matched_fragments": 1524, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 86.6524, "matched_fragments": 1532, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=MT1", "accession": "GCA_001945365.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 86.6427, "matched_fragments": 1481, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas reinekei", "strain": "strain=CCUG 53116", "accession": "GCA_008801455.1", "taxid": 395598, "species_taxid": 395598, "relation_to_type": "type", "validated": true, "ani": 86.5921, "matched_fragments": 1485, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azerbaijanoccidens", "strain": "strain=SWRI74", "accession": "GCA_019145495.1", "taxid": 2842347, "species_taxid": 2842347, "relation_to_type": "type", "validated": true, "ani": 86.5812, "matched_fragments": 1530, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 86.5207, "matched_fragments": 1521, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas laurylsulfativorans", "strain": "strain=AP3_22", "accession": "GCA_002906155.1", "taxid": 1943631, "species_taxid": 1943631, "relation_to_type": "type", "validated": true, "ani": 86.5057, "matched_fragments": 1529, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 86.2884, "matched_fragments": 1645, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 86.1396, "matched_fragments": 1599, "total_fragments": 2442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, 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