{ "type": "genome", "identifier": "GCF_024297065.1", "organism": "Bartonella harrusi", "title": "Bartonella harrusi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of Agricultural and Veterinarian Sciences (FCAV)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024297065.1", "bioproject": "PRJNA224116", "biosample": "SAMN29470399", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2961895", "species_taxid": "2961895", "organism_name": "Bartonella harrusi", "infraspecific_name": "strain=117A", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/17", "asm_name": "ASM2429706v1", "asm_submitter": "School of Agricultural and Veterinarian Sciences (FCAV)", "gbrs_paired_asm": "GCA_024297065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/297/065/GCF_024297065.1_ASM2429706v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2265076", "genome_size_ungapped": "2265076", "gc_percent": "38.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-09-13", "total_gene_count": "2099", "protein_coding_gene_count": "1830", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-17", "dateModified": "2022-07-17", "datePublished": "2022-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella harrusi" ], "sample_taxid": [ "2961895" ], "sample_host_organism": [ "Thylamys macrura" ], "sample_host_organism_id": [], "sample_host_disease": [ "bartonellosis" ], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "0.624 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2265076", "Number of Sequences": "2", "Longest Sequences (bp)": "2235184", "N50 (bp)": "2235184", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.7", "Number of CDSs": "2077", "Average Protein Length": "278.6", "Coding Ratio (%)": "76.6", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella harrusi", "strain": "strain=117A", "accession": "GCA_024297065.1", "taxid": 2961895, 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33047, "relation_to_type": "type", "validated": true, "ani": 85.3167, "matched_fragments": 521, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=ATCC 700727", "accession": "GCA_902825115.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 85.2713, "matched_fragments": 496, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella alsatica", "strain": "strain=CIP 105477", "accession": "GCA_013388295.1", "taxid": 52764, "species_taxid": 52764, "relation_to_type": "type", "validated": true, "ani": 83.6089, "matched_fragments": 459, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella alsatica", "strain": "strain=IBS 382", "accession": "GCA_000280015.1", "taxid": 52764, "species_taxid": 52764, "relation_to_type": "type", "validated": true, "ani": 83.5096, "matched_fragments": 475, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=G-5436", "accession": "GCA_021560445.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.7586, "matched_fragments": 499, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.6902, "matched_fragments": 499, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_1462", "accession": "GCA_019930925.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.6688, "matched_fragments": 499, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=ATCC 700133", "accession": "GCA_000526895.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.3178, "matched_fragments": 463, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC12862", "accession": "GCA_900445535.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.2408, "matched_fragments": 478, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC 12862", "accession": "GCA_000278155.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.2388, "matched_fragments": 488, "total_fragments": 754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902825235.1", "gtdb_species": "s__Bartonella vinsonii", "ani": 85.4715, "matched_fragments": 535, "total_fragments": 754, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902825225.1", "gtdb_species": "s__Bartonella berkhoffii", "ani": 85.4255, "matched_fragments": 506, "total_fragments": 754, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": 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