# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_26	LOCUS_00250	sequence1:29350..29631(+)	frameshift		29203	WP_000603344.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	30.0	77.3
MGA_28	LOCUS_00270	sequence1:31210..32541(+)	partial			WP_000753855.1	choline-binding protein PcpA	49.4	31.6	48.6
MGA_29	LOCUS_00280	sequence1:32683..33210(+)	frameshift		33192,33186	WP_000358451.1	hypothetical protein	84.6	29.6	45.3
MGA_39	LOCUS_00380	sequence1:44025..44876(+)	partial			WP_000725079.1	N-acetylmuramoyl-L-alanine amidase family protein	29.7	18.8	47.1
MGA_43	LOCUS_00420	sequence1:47023..47838(+)	partial			WP_000584691.1	GHKL domain-containing protein	100.0	60.5	93.4
MGA_78	LOCUS_00770	sequence1:88027..90135(+)	partial			WP_001035315.1	pneumococcal surface protein A	20.1	22.8	85.8
MGA_81	LOCUS_00800	sequence1:91921..92118(-)	partial			WP_000693394.1	hypothetical protein	90.8	40.1	88.1
MGA_87	LOCUS_00860	sequence1:96472..96813(+)	frameshift		96795	WP_002262757.1	TetR/AcrR family transcriptional regulator	94.7	50.2	45.8
MGA_94	LOCUS_00930	sequence1:101710..103953(+)	partial			WP_000671355.1	PavB family fibronectin-binding SSURE repeat adhesin	79.8	66.6	93.5
MGA_97	LOCUS_00960	sequence1:106101..106922(-)	frameshift		106950	WP_000160552.1	IS30 family transposase	100.0	70.4	100.0
MGA_98	LOCUS_00970	sequence1:106903..107268(-)	frameshift		106950	WP_000160552.1	IS30 family transposase	88.4	27.6	99.1
MGA_100	LOCUS_00990	sequence1:108643..109176(+)	partial			WP_010921344.1	Panacea domain-containing protein	43.5	41.0	37.7
MGA_108	LOCUS_01070	sequence1:119028..120104(+)	partial			WP_055270450.1	bacteriophage abortive infection AbiH family protein	91.6	74.4	21.3
MGA_133	LOCUS_01320	sequence1:143270..143518(+)	frameshift		143449	WP_000730279.1	DUF3169 family protein	92.7	30.3	65.8
MGA_134	LOCUS_01330	sequence1:143511..144011(+)	frameshift		143452	WP_023947597.1	DUF3169 family protein	100.0	67.5	80.1
MGA_201	LOCUS_01980	sequence1:218375..218743(-)	internal_stop_codon	218939..218941(-),218852..218854(-)		WP_120770310.1	ISL3 family transposase	99.2	30.4	87.4
MGA_202	LOCUS_01990	sequence1:219267..219734(-)	frameshift,internal_stop_codon	219267..219269(-)	219224	WP_120770310.1	ISL3 family transposase	100.0	37.1	83.9
MGA_231	LOCUS_02270	sequence1:253108..253317(+)	partial			WP_000693394.1	hypothetical protein	100.0	46.9	75.4
MGA_252	LOCUS_02480	sequence1:273746..273880(+)	partial			WP_000831905.1	50S ribosomal protein L34	59.1	59.1	100.0
MGA_310	LOCUS_03060	sequence1:328813..329577(-)	frameshift		329720	WP_120719025.1	IS3 family transposase	98.4	55.7	92.8
MGA_311	LOCUS_03070	sequence1:329646..330161(-)	frameshift		329720	WP_140860145.1	IS3 family transposase	86.0	32.7	87.8
MGA_349	LOCUS_03450	sequence1:368364..369398(+)	partial			WP_003703465.1	thioredoxin family protein	74.4	81.4	33.1
MGA_406	LOCUS_04010	sequence1:426788..426937(+)	partial			WP_000082887.1	nuclear transport factor 2 family protein	100.0	19.3	95.9
MGA_460	LOCUS_04550	sequence1:480885..481247(+)	frameshift		480744	WP_001205278.1	virulence factor transcriptional regulator MgaSpn	91.7	22.3	91.8
MGA_470	LOCUS_04650	sequence1:486777..487565(-)	partial			WP_002296505.1	DNA/RNA non-specific endonuclease	74.0	76.8	60.0
MGA_486	LOCUS_04810	sequence1:495013..495435(-)	internal_stop_codon	495013..495015(-)		WP_010965287.1	DUF2786 domain-containing protein	91.4	54.3	31.8
MGA_490	LOCUS_04850	sequence1:496668..498308(+)	partial			WP_010921938.1	CXC chemokine-degrading serine protease SpyCEP	99.6	32.6	58.9
MGA_491	LOCUS_04860	sequence1:498521..499111(+)	frameshift		499024	WP_011922207.1	hypothetical protein	74.5	26.0	45.2
MGA_492	LOCUS_04870	sequence1:499108..500187(+)	frameshift		499024	WP_011922207.1	hypothetical protein	98.1	64.6	71.4
MGA_499	LOCUS_04940	sequence1:508897..509727(+)	partial			WP_001205278.1	virulence factor transcriptional regulator MgaSpn	100.0	56.0	93.1
MGA_502	LOCUS_04970	sequence1:512618..512983(+)	partial			WP_000032532.1	sugar ABC transporter permease	92.6	37.3	100.0
MGA_503	LOCUS_04980	sequence1:512985..513749(-)	frameshift		513892	WP_120719025.1	IS3 family transposase	98.4	55.7	92.8
MGA_504	LOCUS_04990	sequence1:513818..514333(-)	frameshift		513892	WP_140860145.1	IS3 family transposase	86.0	32.7	91.8
MGA_505	LOCUS_05000	sequence1:514393..514959(+)	partial			WP_000032532.1	sugar ABC transporter permease	100.0	62.7	99.5
MGA_530	LOCUS_05250	sequence1:533969..534733(-)	frameshift		534876	WP_120719025.1	IS3 family transposase	98.4	55.7	92.8
MGA_531	LOCUS_05260	sequence1:534802..535374(-)	frameshift		534876	WP_140860145.1	IS3 family transposase	77.4	32.7	87.8
MGA_533	LOCUS_05280	sequence1:536955..537950(-)	partial			WP_004083362.1	radical SAM protein	75.2	63.3	22.3
MGA_550	LOCUS_05450	sequence1:556792..556962(+)	partial			WP_000693030.1	hypothetical protein	80.4	60.8	93.3
MGA_587	LOCUS_05820	sequence1:598169..599626(-)	partial			WP_120171861.1	GBS Bsp-like repeat-containing protein	47.0	21.1	47.4
MGA_622	LOCUS_06170	sequence1:632177..632713(+)	frameshift		632614	WP_140860145.1	IS3 family transposase	85.4	33.9	88.2
MGA_623	LOCUS_06180	sequence1:632689..633528(+)	frameshift		632614	WP_140860145.1	IS3 family transposase	97.8	60.8	81.7
MGA_629	LOCUS_06240	sequence1:640292..641056(-)	frameshift		641199	WP_120719025.1	IS3 family transposase	98.4	55.7	92.8
MGA_630	LOCUS_06250	sequence1:641125..641640(-)	frameshift		641199	WP_140860145.1	IS3 family transposase	86.0	32.7	87.8
MGA_633	LOCUS_06280	sequence1:643700..644344(+)	frameshift		644227	WP_000603333.1	Rpn family recombination-promoting nuclease/putative transposase	99.5	71.9	84.0
MGA_635	LOCUS_06300	sequence1:645165..651209(+)	partial			WP_013399748.1	Rib/alpha-like domain-containing protein	52.0	36.4	21.3
MGA_639	LOCUS_06340	sequence1:655106..658603(+)	partial			WP_000783419.1	LysM domain-containing protein	12.9	34.8	39.2
MGA_656	LOCUS_06510	sequence1:680821..686673(+)	partial			WP_011254514.1	DUF1542 domain-containing protein	48.1	37.1	25.7
MGA_657	LOCUS_06520	sequence1:687162..687338(+)	partial			WP_000048054.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_680	LOCUS_06750	sequence1:705114..705521(-)	partial			WP_000693394.1	hypothetical protein	59.3	54.4	87.5
MGA_744	LOCUS_07390	sequence1:770748..771323(+)	partial			WP_011461945.1	TIR domain-containing protein	68.6	44.8	35.8
MGA_750	LOCUS_07450	sequence1:777699..778439(+)	internal_stop_codon	778437..778439(+)		WP_011986545.1	DMT family transporter	98.4	79.8	48.3
MGA_773	LOCUS_07680	sequence1:797680..797820(+)	partial			WP_000403613.1	NUDIX hydrolase	82.6	23.9	86.8
MGA_815	LOCUS_08100	sequence1:839325..839861(+)	frameshift		839762	WP_140860145.1	IS3 family transposase	85.4	33.9	88.2
MGA_816	LOCUS_08110	sequence1:839837..840676(+)	frameshift		839762	WP_140860145.1	IS3 family transposase	97.8	60.8	81.7
MGA_867	LOCUS_08620	sequence1:890394..898961(+)	partial			WP_002379133.1	isopeptide-forming domain-containing fimbrial protein	20.2	59.4	26.4
MGA_868	LOCUS_08630	sequence1:899037..900875(+)	partial			WP_011836870.1	ZmpA/ZmpB/ZmpC family metallo-endopeptidase	33.7	7.2	29.2
MGA_986	LOCUS_09810	sequence1:1036442..1037362(-)	frameshift		1037349	WP_003020707.1	glycosyltransferase	71.6	69.3	35.2
MGA_987	LOCUS_09820	sequence1:1037426..1038385(-)	frameshift		1037349	WP_000446968.1	glycosyltransferase family 2 protein	71.5	70.7	34.2
MGA_990	LOCUS_09850	sequence1:1040408..1041130(-)	partial			WP_048060798.1	CDP-glycerol glycerophosphotransferase family protein	92.1	61.1	29.7
MGA_993	LOCUS_09880	sequence1:1042990..1043697(-)	frameshift		1043788	WP_011107948.1	glycosyltransferase	96.6	83.5	35.7
MGA_996	LOCUS_09910	sequence1:1046374..1046523(-)	frameshift		1046519	WP_009891044.1	sugar transferase	98.0	21.1	62.5
MGA_997	LOCUS_09920	sequence1:1046511..1046948(-)	frameshift		1046519	WP_000617648.1	sugar transferase	81.4	55.7	62.7
MGA_1022	LOCUS_10170	sequence1:1075667..1075801(-)	partial			WP_000900005.1	ADP-ribosylglycohydrolase family protein	86.4	13.4	92.1
MGA_1028	LOCUS_10230	sequence1:1080088..1080309(-)	internal_stop_codon	1080310..1080312(-)		WP_000234991.1	hypothetical protein	100.0	38.8	89.0
MGA_1029	LOCUS_10240	sequence1:1080310..1080654(-)	internal_stop_codon	1080310..1080312(-)		WP_000234991.1	hypothetical protein	100.0	60.6	93.0
MGA_1030	LOCUS_10250	sequence1:1081163..1081408(+)	frameshift		1081145	WP_000540278.1	Y-family DNA polymerase	100.0	17.2	65.4
MGA_1036	LOCUS_10310	sequence1:1085598..1086362(-)	frameshift		1086505	WP_120719025.1	IS3 family transposase	98.4	55.7	92.8
MGA_1037	LOCUS_10320	sequence1:1086431..1086946(-)	frameshift		1086505	WP_140860145.1	IS3 family transposase	86.0	32.7	91.8
MGA_1053	LOCUS_10480	sequence1:1101261..1102025(-)	frameshift		1102168	WP_120719025.1	IS3 family transposase	98.4	55.7	92.8
MGA_1054	LOCUS_10490	sequence1:1102094..1102666(-)	frameshift		1102168	WP_140860145.1	IS3 family transposase	77.4	32.7	87.8
MGA_1067	LOCUS_10620	sequence1:1118379..1119245(-)	partial			WP_000405235.1	N-acetylmuramoyl-L-alanine amidase LytA	50.0	45.6	67.6
MGA_1070	LOCUS_10650	sequence1:1119958..1120740(-)	partial			WP_000268494.1	hypothetical protein	13.8	27.3	52.8
MGA_1075	LOCUS_10700	sequence1:1122176..1122751(-)	partial			WP_000397492.1	hypothetical protein	51.3	40.3	70.4
MGA_1076	LOCUS_10710	sequence1:1122764..1123165(-)	partial			WP_000235460.1	hypothetical protein	22.6	21.0	86.7
MGA_1078	LOCUS_10730	sequence1:1123667..1124218(-)	partial			WP_012972458.1	tail fiber protein	91.8	53.1	51.2
MGA_1101	LOCUS_10960	sequence1:1138360..1139913(-)	partial			WP_003429838.1	minor capsid protein	60.3	66.8	26.6
MGA_1122	LOCUS_11170	sequence1:1150269..1151240(-)	partial			WP_002399592.1	recombinase RecT	72.4	76.9	53.8
MGA_1130	LOCUS_11250	sequence1:1153565..1154413(-)	partial			WP_001132444.1	replication initiator protein A	77.3	72.7	28.1
MGA_1147	LOCUS_11420	sequence1:1163296..1163499(-)	partial			WP_000587444.1	bifunctional riboflavin kinase/FAD synthetase	94.0	20.7	81.0
MGA_1219	LOCUS_12140	sequence1:1241395..1241526(+)	partial			WP_000268685.1	SPJ_0845 family protein	69.8	69.8	100.0
MGA_1266	LOCUS_12610	sequence1:1290532..1291143(-)	partial			WP_012775543.1	SAG1250 family conjugative relaxase	99.5	32.7	75.4
MGA_1276	LOCUS_12710	sequence1:1297284..1297814(-)	partial			WP_224783972.1	IS5 family transposase	56.2	37.4	90.9
MGA_1278	LOCUS_12730	sequence1:1299052..1300035(+)	partial			WP_000725079.1	N-acetylmuramoyl-L-alanine amidase family protein	85.6	63.9	64.8
MGA_1296	LOCUS_12910	sequence1:1321064..1321876(-)	partial			WP_000468780.1	YSIRK signal domain/LPXTG anchor domain surface protein	89.6	18.6	28.8
MGA_1313	LOCUS_13080	sequence1:1338435..1339541(-)	partial			WP_000248984.1	LPXTG cell wall anchor domain-containing protein	31.5	52.5	39.8
MGA_1314	LOCUS_13090	sequence1:1339824..1340840(-)	partial			WP_006702476.1	LPXTG cell wall anchor domain-containing protein	100.0	46.6	32.8
MGA_1396	LOCUS_13910	sequence1:1423559..1423723(-)	frameshift		1423845	WP_000468585.1	thiamine phosphate synthase	100.0	25.8	94.4
MGA_1397	LOCUS_13920	sequence1:1423807..1424187(-)	frameshift		1423848	WP_000468585.1	thiamine phosphate synthase	98.4	59.3	79.8
MGA_1424	LOCUS_14190	sequence1:1447442..1448134(-)	partial			WP_001042503.1	N-acetylmuramoyl-L-alanine amidase family protein	95.7	66.9	85.0
MGA_1427	LOCUS_14220	sequence1:1450603..1455522(-)	internal_stop_codon	1455565..1455567(-)		WP_000751576.1	ZmpA/ZmpB/ZmpC family metallo-endopeptidase	99.8	82.9	64.2
MGA_1428	LOCUS_14230	sequence1:1455565..1456530(-)	internal_stop_codon	1455565..1455567(-)		WP_000751576.1	ZmpA/ZmpB/ZmpC family metallo-endopeptidase	100.0	16.3	89.1
MGA_1455	LOCUS_14500	sequence1:1482276..1483649(-)	frameshift		1483689	WP_000748873.1	peptide ABC transporter substrate-binding protein	100.0	70.1	79.2
MGA_1456	LOCUS_14510	sequence1:1483660..1484235(-)	frameshift		1483692	WP_000748895.1	peptide ABC transporter substrate-binding protein	99.5	29.1	84.7
MGA_1471	LOCUS_14660	sequence1:1495183..1501554(-)	partial			WP_000514298.1	YSIRK-type signal peptide-containing protein	23.5	29.5	30.4
MGA_1478	LOCUS_14730	sequence1:1507898..1514152(-)	partial			WP_000682781.1	G5 domain-containing protein	73.7	52.0	66.1
MGA_1511	LOCUS_15060	sequence1:1548989..1549825(-)	partial			WP_000514298.1	YSIRK-type signal peptide-containing protein	67.3	9.5	37.3
MGA_1512	LOCUS_15070	sequence1:1549812..1555040(-)	partial			WP_011836785.1	CshA/CshB family fibrillar adhesin-related protein	59.8	51.5	37.8
MGA_1513	LOCUS_15080	sequence1:1555179..1556237(-)	partial			WP_000527121.1	YSIRK signal domain/LPXTG anchor domain surface protein	69.3	7.6	51.2
MGA_1540	LOCUS_15350	sequence1:1580858..1581628(+)	frameshift		1580584,1580744	WP_000843701.1	ferric reductase-like transmembrane domain-containing protein	100.0	64.6	91.8
MGA_1556	LOCUS_15510	sequence1:1598471..1599715(-)	partial			WP_162685290.1	restriction endonuclease subunit S	48.1	51.2	46.7
MGA_1590	LOCUS_15850	sequence1:1633795..1634361(-)	partial			WP_011836463.1	mechanosensitive ion channel family protein	95.2	62.4	61.5
MGA_1636	LOCUS_16310	sequence1:1683631..1687305(-)	partial			WP_011836658.1	LPXTG-anchored SHIRT domain periscope protein	44.1	42.1	41.4
MGA_1638	LOCUS_16330	sequence1:1688768..1689340(+)	frameshift		1689265	WP_140860145.1	IS3 family transposase	77.4	32.7	87.8
MGA_1639	LOCUS_16340	sequence1:1689409..1690173(+)	frameshift		1689265	WP_120719025.1	IS3 family transposase	98.4	55.7	92.8
MGA_1664	LOCUS_16590	sequence1:1721712..1722107(+)	internal_stop_codon	1721676..1721678(+)		WP_000203048.1	glutathione peroxidase	100.0	82.9	95.4
MGA_1669	LOCUS_16640	sequence1:1725418..1725873(-)	partial			WP_181146628.1	peptide MFS transporter	100.0	30.8	88.7
MGA_1675	LOCUS_16700	sequence1:1732762..1734432(+)	partial			WP_003243833.1	two-component system sensor histidine kinase YesM	57.0	53.4	25.5
MGA_1676	LOCUS_16710	sequence1:1734413..1735951(+)	partial			WP_008767033.1	AraC family transcriptional regulator	22.7	40.6	38.8
MGA_1680	LOCUS_16750	sequence1:1740818..1741039(+)	partial			WP_205010568.1	tyrosine-type recombinase/integrase	100.0	18.0	83.6
MGA_1698	LOCUS_16930	sequence1:1758646..1759824(-)	partial			WP_001063353.1	ATP-dependent Clp protease ATP-binding subunit	92.9	51.9	97.8
MGA_1699	LOCUS_16940	sequence1:1760276..1762525(-)	partial			WP_011068088.1	FctA domain-containing protein	70.1	21.7	30.0
MGA_1701	LOCUS_16960	sequence1:1763901..1768286(+)	partial			WP_000792779.1	bacterial Ig-like domain-containing protein	17.0	15.1	25.9
MGA_1742	LOCUS_17370	sequence1:1817739..1818059(+)	frameshift		1818050	WP_000506270.1	conjugal transfer protein	100.0	63.1	99.1
MGA_1751	LOCUS_17460	sequence1:1832513..1832752(-)	partial			WP_001227347.1	helix-turn-helix transcriptional regulator	93.7	63.2	100.0
MGA_1845	LOCUS_18400	sequence1:1921787..1922050(+)	partial			WP_003563849.1	SemiSWEET family transporter	80.5	68.3	48.6
MGA_1854	LOCUS_18490	sequence1:1928854..1929912(-)	internal_stop_codon	1929925..1929927(-)		WP_173876651.1	sensor histidine kinase	100.0	64.2	98.3
MGA_1855	LOCUS_18500	sequence1:1929925..1930452(-)	internal_stop_codon	1929925..1929927(-)		WP_173876651.1	sensor histidine kinase	100.0	31.9	97.7
MGA_1964	LOCUS_19590	sequence1:2049870..2050508(-)	frameshift		2049893	WP_000866062.1	competence system response regulator transcription factor ComE	96.7	82.0	98.0