{ "type": "genome", "identifier": "GCF_024347055.1", "organism": "Vibrio porteresiae DSM 19223", "title": "Vibrio porteresiae DSM 19223", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024347055.1", "bioproject": "PRJNA224116", "biosample": "SAMD00393692", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1123496", "species_taxid": "435912", "organism_name": "Vibrio porteresiae DSM 19223", "infraspecific_name": "strain=MSSRF30", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/13", "asm_name": "ASM2434705v1", "asm_submitter": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "gbrs_paired_asm": "GCA_024347055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/347/055/GCF_024347055.1_ASM2434705v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5501118", "genome_size_ungapped": "5501118", "gc_percent": "45.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024347055.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4993", "protein_coding_gene_count": "4795", "non_coding_gene_count": "157", "pubmed_id": "34905112" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-13", "dateModified": "2022-07-13", "datePublished": "2022-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio porteresiae DSM 19223" ], "sample_taxid": [ "1123496" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India:Tamil Nadu, Pichavaram mangroves" ], "sample_host_location_id": [], "data_size": "1.563 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5501118", "Number of Sequences": "2", "Longest Sequences (bp)": "3625884", "N50 (bp)": "3625884", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.8", "Number of CDSs": "4868", "Average Protein Length": "321.9", "Coding Ratio (%)": "85.4", "Number of rRNAs": "34", "Number of tRNAs": "120", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio porteresiae", 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"strain": "strain=NBRC 104589", "accession": "GCA_007990935.1", "taxid": 512650, "species_taxid": 512650, "relation_to_type": "type", "validated": true, "ani": 78.7925, "matched_fragments": 181, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.7108, "matched_fragments": 297, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sagamiensis", "strain": "strain=NBRC 104589", "accession": "GCA_000400425.1", "taxid": 512650, "species_taxid": 512650, "relation_to_type": "type", "validated": true, "ani": 78.6433, "matched_fragments": 184, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": 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