{ "tc_result": [ { "organism_name": "Amphritea spongicola", "strain": "strain=JCM 16668", "accession": "GCA_017051665.1", "taxid": 707589, "species_taxid": 707589, "relation_to_type": "type", "validated": true, "ani": 99.795, "matched_fragments": 1623, "total_fragments": 1663, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amphritea ceti", "strain": "strain=KCTC 42154", "accession": "GCA_024347215.1", "taxid": 1524258, "species_taxid": 1524258, "relation_to_type": "type", "validated": true, "ani": 81.9731, "matched_fragments": 1101, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea japonica", "strain": "strain=JCM 14782", "accession": "GCA_024347275.1", "taxid": 452627, "species_taxid": 452627, "relation_to_type": "type", "validated": true, "ani": 79.0458, "matched_fragments": 207, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea japonica", "strain": "strain=ATCC BAA-1530", "accession": "GCA_016592435.1", "taxid": 452627, "species_taxid": 452627, "relation_to_type": "type", "validated": true, "ani": 78.9823, "matched_fragments": 208, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea balenae", "strain": "strain=JCM 14781", "accession": "GCA_014646975.1", "taxid": 452629, "species_taxid": 452629, "relation_to_type": "type", "validated": true, "ani": 78.5047, "matched_fragments": 272, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea balenae", "strain": "strain=JAMM 1525", "accession": "GCA_003858655.1", "taxid": 452629, "species_taxid": 452629, "relation_to_type": "type", "validated": true, "ani": 78.4346, "matched_fragments": 283, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea opalescens", "strain": "strain=ANRC-JH13", "accession": "GCA_003957515.1", "taxid": 2490544, "species_taxid": 2490544, "relation_to_type": "type", "validated": true, "ani": 78.3034, "matched_fragments": 160, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella amazonensis", "strain": "strain=SB2B", "accession": "GCA_000015245.1", "taxid": 60478, "species_taxid": 60478, "relation_to_type": "type", "validated": true, "ani": 78.2487, "matched_fragments": 58, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea pacifica", "strain": "strain=ZJ14W", "accession": "GCA_016924145.1", "taxid": 2811233, "species_taxid": 2811233, "relation_to_type": "type", "validated": true, "ani": 78.2275, "matched_fragments": 236, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea atlantica", "strain": "strain=DSM 18887", "accession": "GCA_900111095.1", "taxid": 355243, "species_taxid": 355243, "relation_to_type": "type", "validated": true, "ani": 78.0408, "matched_fragments": 238, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 77.3279, "matched_fragments": 159, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium mangrovicola", "strain": "strain=DSM 27697", "accession": "GCA_004339595.1", "taxid": 1476959, "species_taxid": 1476959, "relation_to_type": "type", "validated": true, "ani": 77.1223, "matched_fragments": 136, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium ramblicola", "strain": "strain=D7", "accession": "GCA_019084545.1", "taxid": 2849041, "species_taxid": 2849041, "relation_to_type": "type", "validated": true, "ani": 76.8045, "matched_fragments": 109, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 76.654, "matched_fragments": 50, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrincola lacisaponensis", "strain": "strain=4CA", "accession": "GCA_000691225.1", "taxid": 267850, "species_taxid": 267850, "relation_to_type": "type", "validated": true, "ani": 76.5932, "matched_fragments": 87, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 76.2737, "matched_fragments": 58, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP3882", "accession": "GCA_001400955.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 75.9913, "matched_fragments": 55, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas viridiflava", "strain": "strain=DSM 6694", "accession": "GCA_001305955.1", "taxid": 33069, "species_taxid": 33069, "relation_to_type": "type", "validated": true, "ani": 75.7051, "matched_fragments": 53, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas viridiflava", "strain": "strain=ICMP 2848", "accession": "GCA_001642795.1", "taxid": 33069, "species_taxid": 33069, "relation_to_type": "type", "validated": true, "ani": 75.3526, "matched_fragments": 53, "total_fragments": 1663, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 90.62, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017051665.1", "gtdb_species": "s__Amphritea spongicola", "ani": 99.795, "matched_fragments": 1623, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016592435.1", "gtdb_species": "s__Amphritea japonica", "ani": 79.0653, "matched_fragments": 209, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018860855.1", "gtdb_species": "s__Amphritea atlantica_A", "ani": 78.4669, "matched_fragments": 170, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003858655.1", "gtdb_species": "s__Amphritea balenae", "ani": 78.4436, "matched_fragments": 283, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003957515.1", "gtdb_species": "s__Amphritea opalescens", "ani": 78.318, "matched_fragments": 161, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016744155.1", "gtdb_species": "s__Amphritea sp016744155", "ani": 78.2561, "matched_fragments": 179, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016924235.1", "gtdb_species": "s__Amphritea sp016924235", "ani": 78.2132, "matched_fragments": 234, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018223185.1", "gtdb_species": "s__Amphritea sp018223185", "ani": 78.1132, "matched_fragments": 242, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900111095.1", "gtdb_species": "s__Amphritea atlantica", "ani": 78.0316, "matched_fragments": 240, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Amphritea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015209595.1", "gtdb_species": "s__Pontibacterium sp015209595", "ani": 77.9834, "matched_fragments": 191, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Pontibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014268445.2", "gtdb_species": "s__Pseudomonas_E sp900187515", "ani": 77.6688, "matched_fragments": 69, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900105735.1", "gtdb_species": "s__Pseudomonas_E yamanorum", "ani": 77.5885, "matched_fragments": 74, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001597735.1", "gtdb_species": "s__Neptuniibacter pectenicola", "ani": 77.3904, "matched_fragments": 72, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Neptuniibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900155945.1", "gtdb_species": "s__Marinobacterium stanieri", "ani": 77.1665, "matched_fragments": 162, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.47", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000764495.1", "gtdb_species": "s__Nitrincola sp000764495", "ani": 77.1557, "matched_fragments": 85, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Nitrincola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004339595.1", "gtdb_species": "s__Marinobacterium mangrovicola", "ani": 77.1168, "matched_fragments": 137, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019084545.1", "gtdb_species": "s__Marinobacterium sp019084545", "ani": 76.7817, "matched_fragments": 109, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000691225.1", "gtdb_species": "s__Nitrincola lacisaponensis", "ani": 76.5368, "matched_fragments": 87, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Nitrincola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013373085.1", "gtdb_species": "s__Marinobacterium_A sp013373085", "ani": 76.0923, "matched_fragments": 99, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001642795.1", "gtdb_species": "s__Pseudomonas_E viridiflava", "ani": 75.3526, "matched_fragments": 53, "total_fragments": 1663, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "96.41", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 1379, "status": "-" } ] }