{ "tc_result": [ { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1551, "total_fragments": 1555, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio crassostreae", "strain": "strain=LMG 22240", "accession": "GCA_024347415.1", "taxid": 246167, "species_taxid": 246167, "relation_to_type": "type", "validated": true, "ani": 81.679, "matched_fragments": 518, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio atlanticus", "strain": "strain=CECT 7223", "accession": "GCA_024347315.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 81.4544, "matched_fragments": 502, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio echinoideorum", "strain": "strain=DSM 107264", "accession": "GCA_024347455.1", "taxid": 2100116, "species_taxid": 2100116, "relation_to_type": "type", "validated": true, "ani": 81.3679, "matched_fragments": 496, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=DSM 27495", "accession": "GCA_024347375.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 81.2874, "matched_fragments": 515, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_024347335.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 81.2511, "matched_fragments": 525, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tasmaniensis", "strain": "strain=LMG 20012", "accession": "GCA_024347635.1", "taxid": 212663, "species_taxid": 212663, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1454, "matched_fragments": 506, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio atlanticus", "strain": "strain=CECT 7223", "accession": "GCA_900089855.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 81.1143, "matched_fragments": 483, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=CECT 7244", "accession": "GCA_024347495.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 81.024, "matched_fragments": 550, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9481, "matched_fragments": 468, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=Corallo1", "accession": "GCA_002156455.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 80.8513, "matched_fragments": 488, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=VB 8.9", "accession": "GCA_013416885.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 80.6795, "matched_fragments": 538, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=DSM 23502", "accession": "GCA_005281825.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 80.6463, "matched_fragments": 541, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=CCUG 48643", "accession": "GCA_008801295.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.532, "matched_fragments": 437, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_005281815.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4695, "matched_fragments": 435, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio profundi", "strain": "strain=TP187", "accession": "GCA_005281835.1", "taxid": 1774960, "species_taxid": 1774960, "relation_to_type": "type", "validated": true, "ani": 80.2444, "matched_fragments": 480, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio neonatus", "strain": "strain=JCM 21521", "accession": "GCA_024346975.1", "taxid": 278860, "species_taxid": 278860, "relation_to_type": "type", "validated": true, "ani": 79.8931, "matched_fragments": 233, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=IFO 15640", "accession": "GCA_019977755.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 79.7009, "matched_fragments": 283, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio casei", "strain": "strain=DSM 22364", "accession": "GCA_002218025.2", "taxid": 673372, "species_taxid": 673372, "relation_to_type": "type", "validated": true, "ani": 79.6776, "matched_fragments": 215, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ziniensis", "strain": "strain=ZWAL4003", "accession": "GCA_011064285.1", "taxid": 2711221, "species_taxid": 2711221, "relation_to_type": "type", "validated": true, "ani": 79.6048, "matched_fragments": 293, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 79.5821, "matched_fragments": 334, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 79.5705, "matched_fragments": 384, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio halioticoli", "strain": "strain=NBRC 102217", "accession": "GCA_000496695.1", "taxid": 71388, "species_taxid": 71388, "relation_to_type": "type", "validated": true, "ani": 79.1314, "matched_fragments": 209, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio plantisponsor", "strain": "strain=LMG 24470", "accession": "GCA_013041605.1", "taxid": 664643, "species_taxid": 664643, "relation_to_type": "type", "validated": true, "ani": 79.0144, "matched_fragments": 316, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio litoralis", "strain": "strain=DSM 17657", "accession": "GCA_000426765.1", "taxid": 335972, "species_taxid": 335972, "relation_to_type": "type", "validated": true, "ani": 78.9335, "matched_fragments": 226, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 78.907, "matched_fragments": 316, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000272145.2", "gtdb_species": "s__Vibrio sp000272145", "ani": 98.1223, "matched_fragments": 1202, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000272045.2", "gtdb_species": "s__Vibrio crassostreae_C", "ani": 81.2533, "matched_fragments": 494, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.007, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_001048535.1", "gtdb_species": "s__Vibrio crassostreae", "ani": 81.2419, "matched_fragments": 485, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 177, "status": "-" }, { "accession": "GCF_014878155.1", "gtdb_species": "s__Vibrio lentus", "ani": 81.0126, "matched_fragments": 483, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.60", "min_intra_species_ani": "95.56", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 91, "status": "-" }, { "accession": "GCF_004764665.1", "gtdb_species": "s__Vibrio echinoideorum", "ani": 80.9876, "matched_fragments": 477, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.83", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_007858795.1", "gtdb_species": "s__Vibrio sp007858795", "ani": 80.887, "matched_fragments": 484, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000272405.2", "gtdb_species": "s__Vibrio tasmaniensis_A", "ani": 80.8826, "matched_fragments": 472, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 96.5791, "mean_intra_species_ani": "97.23", "min_intra_species_ani": "97.01", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_000272105.2", "gtdb_species": "s__Vibrio splendidus_I", "ani": 80.821, "matched_fragments": 474, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005281825.1", "gtdb_species": "s__Vibrio gallaecicus", "ani": 80.6698, "matched_fragments": 538, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005281815.1", "gtdb_species": "s__Vibrio chagasii", "ani": 80.4856, "matched_fragments": 434, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.30", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_900233005.1", "gtdb_species": "s__Vibrio tapetis", "ani": 80.2628, "matched_fragments": 326, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005281835.1", "gtdb_species": "s__Vibrio profundi", "ani": 80.2514, "matched_fragments": 479, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000169995.1", "gtdb_species": "s__Vibrio sp000169995", "ani": 80.1151, "matched_fragments": 436, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002877365.1", "gtdb_species": "s__Vibrio sp002877365", "ani": 80.0121, "matched_fragments": 329, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002873395.1", "gtdb_species": "s__Vibrio sp002873395", "ani": 79.9568, "matched_fragments": 371, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001874155.1", "gtdb_species": "s__Vibrio sp001874155", "ani": 79.909, "matched_fragments": 251, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011064285.1", "gtdb_species": "s__Vibrio ziniensis", "ani": 79.6697, "matched_fragments": 289, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000827885.1", "gtdb_species": "s__Vibrio renipiscarius", "ani": 79.6092, "matched_fragments": 334, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003970385.1", "gtdb_species": "s__Vibrio aquaticus", "ani": 79.5935, "matched_fragments": 383, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000400365.1", "gtdb_species": "s__Vibrio jasicida", "ani": 79.371, "matched_fragments": 384, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.91", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_003970425.1", "gtdb_species": "s__Vibrio penaeicida", "ani": 79.1523, "matched_fragments": 250, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.14", "min_intra_species_ani": "96.14", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013041605.1", "gtdb_species": "s__Vibrio plantisponsor", "ani": 79.0397, "matched_fragments": 313, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014596725.1", "gtdb_species": "s__Vibrio sp014596725", "ani": 78.9406, "matched_fragments": 303, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000426765.1", "gtdb_species": "s__Vibrio litoralis", "ani": 78.9321, "matched_fragments": 227, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.36", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000740015.1", "gtdb_species": "s__Vibrio diazotrophicus", "ani": 78.9289, "matched_fragments": 315, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.42", "min_intra_species_ani": "96.82", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_015278125.1", "gtdb_species": "s__Vibrio sp015278125", "ani": 78.793, "matched_fragments": 340, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }