{ "type": "genome", "identifier": "GCF_024347395.1", "organism": "Vibrio cortegadensis", "title": "Vibrio cortegadensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024347395.1", "bioproject": "PRJNA224116", "biosample": "SAMD00428688", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1328770", "species_taxid": "1328770", "organism_name": "Vibrio cortegadensis", "infraspecific_name": "strain=CECT 7227", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/13", "asm_name": "ASM2434739v1", "asm_submitter": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "gbrs_paired_asm": "GCA_024347395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/347/395/GCF_024347395.1_ASM2434739v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4668569", "genome_size_ungapped": "4668569", "gc_percent": "42.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024347395.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4219", "protein_coding_gene_count": "4009", "non_coding_gene_count": "160", "pubmed_id": "34905112" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-13", "dateModified": "2022-07-13", "datePublished": "2022-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio cortegadensis" ], "sample_taxid": [ "1328770" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.314 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4668569", "Number of Sequences": "4", "Longest Sequences (bp)": "3116092", "N50 (bp)": "3116092", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.5", "Number of CDSs": "4067", "Average Protein Length": "323.0", "Coding Ratio (%)": "84.4", "Number of rRNAs": "43", "Number of tRNAs": "113", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1551, "total_fragments": 1555, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio crassostreae", "strain": "strain=LMG 22240", "accession": "GCA_024347415.1", "taxid": 246167, "species_taxid": 246167, "relation_to_type": "type", "validated": true, "ani": 81.679, "matched_fragments": 518, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio atlanticus", "strain": "strain=CECT 7223", "accession": "GCA_024347315.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 81.4544, "matched_fragments": 502, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio echinoideorum", "strain": "strain=DSM 107264", "accession": "GCA_024347455.1", "taxid": 2100116, "species_taxid": 2100116, 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81.1454, "matched_fragments": 506, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio atlanticus", "strain": "strain=CECT 7223", "accession": "GCA_900089855.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 81.1143, "matched_fragments": 483, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=CECT 7244", "accession": "GCA_024347495.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 81.024, "matched_fragments": 550, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9481, "matched_fragments": 468, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=Corallo1", "accession": "GCA_002156455.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 80.8513, "matched_fragments": 488, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=VB 8.9", "accession": "GCA_013416885.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 80.6795, "matched_fragments": 538, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=DSM 23502", "accession": "GCA_005281825.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 80.6463, "matched_fragments": 541, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=CCUG 48643", "accession": "GCA_008801295.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.532, "matched_fragments": 437, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_005281815.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4695, "matched_fragments": 435, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio profundi", "strain": "strain=TP187", "accession": "GCA_005281835.1", "taxid": 1774960, "species_taxid": 1774960, "relation_to_type": "type", "validated": true, "ani": 80.2444, "matched_fragments": 480, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio neonatus", "strain": "strain=JCM 21521", "accession": "GCA_024346975.1", "taxid": 278860, "species_taxid": 278860, "relation_to_type": "type", "validated": true, "ani": 79.8931, "matched_fragments": 233, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=IFO 15640", "accession": "GCA_019977755.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 79.7009, "matched_fragments": 283, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio casei", "strain": "strain=DSM 22364", "accession": "GCA_002218025.2", "taxid": 673372, "species_taxid": 673372, "relation_to_type": "type", "validated": true, "ani": 79.6776, "matched_fragments": 215, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ziniensis", "strain": "strain=ZWAL4003", "accession": "GCA_011064285.1", "taxid": 2711221, "species_taxid": 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79.1314, "matched_fragments": 209, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio plantisponsor", "strain": "strain=LMG 24470", "accession": "GCA_013041605.1", "taxid": 664643, "species_taxid": 664643, "relation_to_type": "type", "validated": true, "ani": 79.0144, "matched_fragments": 316, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio litoralis", "strain": "strain=DSM 17657", "accession": "GCA_000426765.1", "taxid": 335972, "species_taxid": 335972, "relation_to_type": "type", "validated": true, "ani": 78.9335, "matched_fragments": 226, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 78.907, "matched_fragments": 316, "total_fragments": 1555, 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