{
    "type": "genome",
    "identifier": "GCF_024347655.1",
    "organism": "Vibrio toranzoniae",
    "title": "Vibrio toranzoniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024347655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00428701",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1194427",
        "species_taxid": "1194427",
        "organism_name": "Vibrio toranzoniae",
        "infraspecific_name": "strain=CECT 7225",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/13",
        "asm_name": "ASM2434765v1",
        "asm_submitter": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University",
        "gbrs_paired_asm": "GCA_024347655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/347/655/GCF_024347655.1_ASM2434765v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4605952",
        "genome_size_ungapped": "4605952",
        "gc_percent": "44.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024347655.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "4124",
        "protein_coding_gene_count": "3897",
        "non_coding_gene_count": "175",
        "pubmed_id": "34905112"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-13",
    "dateModified": "2022-07-13",
    "datePublished": "2022-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vibrio toranzoniae"
        ],
        "sample_taxid": [
            "1194427"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.302 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4605952",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "3169590",
        "N50 (bp)": "3169590",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.0",
        "Number of CDSs": "3942",
        "Average Protein Length": "324.6",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "40",
        "Number of tRNAs": "131",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Vibrio toranzoniae",
                "strain": "strain=CECT 7225",
                "accession": "GCA_024347655.1",
                "taxid": 1194427,
                "species_taxid": 1194427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1530,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio toranzoniae",
                "strain": "strain=CECT 7225",
                "accession": "GCA_900089765.1",
                "taxid": 1194427,
                "species_taxid": 1194427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9847,
                "matched_fragments": 1496,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio toranzoniae",
                "strain": "strain=Vb 10.8",
                "accession": "GCA_001541335.1",
                "taxid": 1194427,
                "species_taxid": 1194427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9587,
                "matched_fragments": 1466,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio kanaloae",
                "strain": "strain=LMG 20539",
                "accession": "GCA_024347535.1",
                "taxid": 170673,
                "species_taxid": 170673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.4097,
                "matched_fragments": 1362,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio kanaloae",
                "strain": "strain=CCUG 56968",
                "accession": "GCA_008801285.1",
                "taxid": 170673,
                "species_taxid": 170673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3516,
                "matched_fragments": 1339,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio pomeroyi",
                "strain": "strain=LMG 20537",
                "accession": "GCA_024347595.1",
                "taxid": 198832,
                "species_taxid": 198832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6208,
                "matched_fragments": 1279,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio celticus",
                "strain": "strain=CECT 7224",
                "accession": "GCA_024347335.1",
                "taxid": 446372,
                "species_taxid": 446372,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4467,
                "matched_fragments": 1249,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio coralliirubri",
                "strain": "strain=DSM 27495",
                "accession": "GCA_024347375.1",
                "taxid": 1516159,
                "species_taxid": 1516159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3217,
                "matched_fragments": 1257,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio gigantis",
                "strain": "strain=LMG 22741",
                "accession": "GCA_024347515.1",
                "taxid": 296199,
                "species_taxid": 296199,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2365,
                "matched_fragments": 1244,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio gigantis",
                "strain": "strain=LGP 13",
                "accession": "GCA_002156475.1",
                "taxid": 296199,
                "species_taxid": 296199,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1153,
                "matched_fragments": 1202,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio bathopelagicus",
                "strain": "strain=Sal10",
                "accession": "GCA_014879975.1",
                "taxid": 2777577,
                "species_taxid": 2777577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0348,
                "matched_fragments": 1244,
                "total_fragments": 1534,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900089765.1",
                "gtdb_species": "s__Vibrio toranzoniae",
                "ani": 99.9847,
                "matched_fragments": 1496,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.372,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008801285.1",
                "gtdb_species": "s__Vibrio kanaloae",
                "ani": 95.362,
                "matched_fragments": 1338,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.372,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_013394185.1",
                "gtdb_species": "s__Vibrio sp013394185",
                "ani": 89.728,
                "matched_fragments": 1271,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000316985.1",
                "gtdb_species": "s__Vibrio sp000316985",
                "ani": 89.2685,
                "matched_fragments": 1163,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001048535.1",
                "gtdb_species": "s__Vibrio crassostreae",
                "ani": 88.6746,
                "matched_fragments": 1242,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "96.20",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 177,
                "status": "-"
            },
            {
                "accession": "GCF_000272105.2",
                "gtdb_species": "s__Vibrio splendidus_I",
                "ani": 88.515,
                "matched_fragments": 1201,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002156455.1",
                "gtdb_species": "s__Vibrio coralliirubri",
                "ani": 88.407,
                "matched_fragments": 1169,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.2787,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "95.77",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_007858795.1",
                "gtdb_species": "s__Vibrio sp007858795",
                "ani": 88.3714,
                "matched_fragments": 1236,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002156525.1",
                "gtdb_species": "s__Vibrio celticus",
                "ani": 88.3079,
                "matched_fragments": 1205,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.2787,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002875945.1",
                "gtdb_species": "s__Vibrio lentus_A",
                "ani": 88.2804,
                "matched_fragments": 1237,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002156475.1",
                "gtdb_species": "s__Vibrio gigantis",
                "ani": 88.1153,
                "matched_fragments": 1202,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014879975.1",
                "gtdb_species": "s__Vibrio bathopelagicus",
                "ani": 88.0346,
                "matched_fragments": 1244,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014878155.1",
                "gtdb_species": "s__Vibrio lentus",
                "ani": 88.0075,
                "matched_fragments": 1224,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.60",
                "min_intra_species_ani": "95.56",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 91,
                "status": "-"
            },
            {
                "accession": "GCF_002875705.1",
                "gtdb_species": "s__Vibrio sp002875705",
                "ani": 87.8343,
                "matched_fragments": 1181,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.66",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000272405.2",
                "gtdb_species": "s__Vibrio tasmaniensis_A",
                "ani": 87.5827,
                "matched_fragments": 1128,
                "total_fragments": 1534,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 96.5791,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "97.01",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 20,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": 0.215,
        "doubling_h": -0.527,
        "growth_tmp": 28.0,
        "optimum_tmp": 26.308,
        "optimum_ph": 7.4,
        "genome_size": 4544407.5,
        "gc_content": 43.93,
        "coding_genes": 4624.827,
        "rRNA16S_genes": 10.063,
        "tRNA_genes": 116.411,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.864,
        "range_salinity": 0.923,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.976,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.023,
        "bacillus_cell_shape": 0.637,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.034,
        "vibrio_cell_shape": 0.327,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Vibrio",
        "toranzoniae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}