{
    "type": "genome",
    "identifier": "GCF_024349285.1",
    "organism": "Streptomyces somaliensis DSM 40738",
    "title": "Streptomyces somaliensis DSM 40738",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Newcastle University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_024349285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27412229",
        "wgs_master": "JAMCDO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1134445",
        "species_taxid": "78355",
        "organism_name": "Streptomyces somaliensis DSM 40738",
        "infraspecific_name": "strain=DSM 40738",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/20",
        "asm_name": "ASM2434928v1",
        "asm_submitter": "Newcastle University",
        "gbrs_paired_asm": "GCA_024349285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/349/285/GCF_024349285.1_ASM2434928v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4945925",
        "genome_size_ungapped": "4927280",
        "gc_percent": "74.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_024349285.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "4653",
        "protein_coding_gene_count": "4027",
        "non_coding_gene_count": "87",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-20",
    "dateModified": "2022-07-20",
    "datePublished": "2022-07-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces somaliensis DSM 40738"
        ],
        "sample_taxid": [
            "1134445"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Somalia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.307 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4945925",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "3991522",
        "N50 (bp)": "3991522",
        "Gap Ratio (%)": "0.498653",
        "GCcontent (%)": "74.1",
        "Number of CDSs": "4506",
        "Average Protein Length": "308.2",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "19",
        "Number of tRNAs": "88",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
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                "organism_name": "Streptomyces somaliensis",
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                "relation_to_type": "type",
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                "total_fragments": 1648,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Streptomyces sudanensis",
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                "accession": "GCA_023614315.1",
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                "relation_to_type": "type",
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                "ani": 91.9433,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces roseolilacinus",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Streptomyces fradiae",
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                "accession": "GCA_008704425.1",
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                "relation_to_type": "suspected-type",
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                "matched_fragments": 1330,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fradiae",
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                "accession": "GCA_009834665.1",
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                "validated": true,
                "ani": 88.4149,
                "matched_fragments": 1302,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fradiae",
                "strain": "strain=NRRL B-1195",
                "accession": "GCA_002154445.1",
                "taxid": 1906,
                "species_taxid": 1906,
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                "validated": true,
                "ani": 88.1142,
                "matched_fragments": 875,
                "total_fragments": 1648,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
                "taxid": 2306967,
                "species_taxid": 2306967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0232,
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                "total_fragments": 1648,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces formicae",
                "strain": "strain=1H-GS9",
                "accession": "GCA_022647665.1",
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                "species_taxid": 1616117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9123,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces harenosi",
                "strain": "strain=PRKS01-65",
                "accession": "GCA_011008945.1",
                "taxid": 2697029,
                "species_taxid": 2697029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0753,
                "matched_fragments": 970,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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        "gtdb_result": [
            {
                "accession": "GCA_012396115.1",
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                "total_fragments": 1648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000258595.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000478605.2",
                "gtdb_species": "s__Streptomyces thermolilacinus",
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            },
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            }
        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.208,
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    "_genome_taxon": [
        "Streptomyces",
        "somaliensis",
        "DSM",
        "40738"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}