{ "type": "genome", "identifier": "GCF_024359525.1", "organism": "Paracoccus albicereus", "title": "Paracoccus albicereus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_024359525.1", "bioproject": "PRJNA224116", "biosample": "SAMN26328109", "wgs_master": "JAKZEU000000000.1", "refseq_category": "reference genome", "taxid": "2922394", "species_taxid": "2922394", "organism_name": "Paracoccus albicereus", "infraspecific_name": "strain=TK19116", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/20", "asm_name": "ASM2435952v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_024359525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/359/525/GCF_024359525.1_ASM2435952v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3660938", "genome_size_ungapped": "3660938", "gc_percent": "64.000000", "replicon_count": "1", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_024359525.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "3578", "protein_coding_gene_count": "3467", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-20", "dateModified": "2022-07-20", "datePublished": "2022-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus albicereus" ], "sample_taxid": [ "2922394" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guishan Island" ], "sample_host_location_id": [], "data_size": "1.011 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3660938", "Number of Sequences": "20", "Longest Sequences (bp)": "1098392", "N50 (bp)": "536683", "Gap Ratio (%)": "0.000027", "GCcontent (%)": "64.2", "Number of CDSs": "3516", "Average Protein Length": "317.2", "Coding Ratio (%)": "91.4", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus siganidrum", "strain": "strain=M26", "accession": "GCA_003709565.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 80.1598, "matched_fragments": 594, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus zhejiangensis", "strain": "strain=J6", "accession": "GCA_002847445.1", "taxid": 1077935, "species_taxid": 1077935, "relation_to_type": "type", "validated": true, "ani": 80.1508, "matched_fragments": 624, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=DSM 26381", "accession": "GCA_003594835.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 80.118, "matched_fragments": 563, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus zeaxanthinifaciens", "strain": "strain=ATCC 21588", "accession": "GCA_000420145.1", "taxid": 187400, "species_taxid": 187400, "relation_to_type": "type", "validated": true, "ani": 80.068, "matched_fragments": 487, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus liaowanqingii", "strain": "strain=2251", "accession": "GCA_004683865.2", "taxid": 2560053, "species_taxid": 2560053, "relation_to_type": "type", "validated": true, "ani": 79.9666, "matched_fragments": 539, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_014656455.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 79.9279, "matched_fragments": 503, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lichenicola", "strain": "strain=YIM 132242", "accession": "GCA_009708075.1", "taxid": 2665644, "species_taxid": 2665644, "relation_to_type": "type", "validated": true, "ani": 79.9236, "matched_fragments": 515, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_016757275.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 79.9036, "matched_fragments": 499, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 79.8672, "matched_fragments": 529, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tibetensis", "strain": "strain=CGMCC 1.8925", "accession": "GCA_900102505.1", "taxid": 336292, "species_taxid": 336292, "relation_to_type": "type", "validated": true, "ani": 79.855, "matched_fragments": 532, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 79.8388, "matched_fragments": 502, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 79.77, "matched_fragments": 520, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus acridae", "strain": "strain=CGMCC 1.15419", "accession": "GCA_014642735.1", "taxid": 1795310, "species_taxid": 1795310, "relation_to_type": "type", "validated": true, "ani": 79.7287, "matched_fragments": 508, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus hibiscisoli", "strain": "strain=CCTCC AB2016182", "accession": "GCA_005048265.1", "taxid": 2023261, "species_taxid": 2023261, "relation_to_type": "type", "validated": true, "ani": 79.6514, "matched_fragments": 516, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=CMB17", "accession": "GCA_004310385.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 79.5385, "matched_fragments": 497, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus yeei", "strain": "strain=ATCC BAA-599", "accession": "GCA_000622145.1", "taxid": 147645, "species_taxid": 147645, "relation_to_type": "type", "validated": true, "ani": 79.5234, "matched_fragments": 476, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=DSM 26170", "accession": "GCA_900188295.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 79.4889, "matched_fragments": 495, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus alcaliphilus", "strain": "strain=DSM 8512", "accession": "GCA_900110285.1", "taxid": 34002, "species_taxid": 34002, "relation_to_type": "type", "validated": true, "ani": 79.4371, "matched_fragments": 517, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus indicus", "strain": "strain=IO390502", "accession": "GCA_003056335.1", "taxid": 2079229, "species_taxid": 2079229, "relation_to_type": "type", "validated": true, "ani": 79.4266, "matched_fragments": 498, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus everestensis", "strain": "strain=S8-55", "accession": "GCA_021491915.1", "taxid": 2903900, "species_taxid": 2903900, "relation_to_type": "type", "validated": true, "ani": 79.4142, "matched_fragments": 438, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salipaludis", "strain": "strain=WN007", "accession": "GCA_002287065.1", "taxid": 2032623, "species_taxid": 2032623, "relation_to_type": "type", "validated": true, "ani": 79.3964, "matched_fragments": 452, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus isoporae", "strain": "strain=DSM 22220", "accession": "GCA_900101865.1", "taxid": 591205, "species_taxid": 591205, "relation_to_type": "type", "validated": true, "ani": 79.1938, "matched_fragments": 433, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 79.1728, "matched_fragments": 504, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lutimaris", "strain": "strain=CECT 8525", "accession": "GCA_003337565.1", "taxid": 1490030, "species_taxid": 1490030, "relation_to_type": "type", "validated": true, "ani": 79.1153, "matched_fragments": 474, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 78.9253, "matched_fragments": 481, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018860165.1", "gtdb_species": "s__Paracoccus sp018860165", "ani": 80.2103, "matched_fragments": 572, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002847445.1", "gtdb_species": "s__Paracoccus zhejiangensis", "ani": 80.1651, "matched_fragments": 621, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003709565.1", "gtdb_species": "s__Paracoccus siganidrum", "ani": 80.1464, "matched_fragments": 595, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017356265.1", "gtdb_species": "s__Paracoccus fontiphilus", "ani": 80.1445, "matched_fragments": 500, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900631945.1", "gtdb_species": "s__Paracoccus haematequi", "ani": 80.1274, "matched_fragments": 525, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000420145.1", "gtdb_species": "s__Paracoccus zeaxanthinifaciens", "ani": 80.0451, "matched_fragments": 489, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009708075.1", "gtdb_species": "s__Paracoccus lichenicola", "ani": 79.9544, "matched_fragments": 512, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004683865.2", "gtdb_species": "s__Paracoccus liaowanqingii", "ani": 79.9522, "matched_fragments": 542, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014656455.1", "gtdb_species": "s__Paracoccus aerius", "ani": 79.9279, "matched_fragments": 503, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018860625.1", "gtdb_species": "s__Paracoccus sp018860625", "ani": 79.9227, "matched_fragments": 476, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016446475.1", "gtdb_species": "s__Paracoccus binzhouensis", "ani": 79.8853, "matched_fragments": 525, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006151785.1", "gtdb_species": "s__Paracoccus marcusii", "ani": 79.8842, "matched_fragments": 497, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.75", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_017744015.1", "gtdb_species": "s__Paracoccus sp002732665", "ani": 79.8508, "matched_fragments": 550, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900102505.1", "gtdb_species": "s__Paracoccus tibetensis", "ani": 79.8449, "matched_fragments": 533, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017315735.1", "gtdb_species": "s__Paracoccus sp017315735", "ani": 79.789, "matched_fragments": 518, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014642735.1", "gtdb_species": "s__Paracoccus acridae", "ani": 79.7363, "matched_fragments": 507, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005048265.1", "gtdb_species": "s__Paracoccus hibiscisoli", "ani": 79.6306, "matched_fragments": 518, "total_fragments": 1212, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.40", "min_intra_species_ani": "96.40", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": 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